Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01216 ATGGAAAATGAAGGCTGGAGTAGGTGTTCTTGCTCTGCGCGTACTCTGGTATCAGTATTGGCTACAATTATTCTCGTCTTCCAACCAGATTACTGCATCGCTAAGCGACACCGACCATGTCCTACTTCATCATGCGGCCAAATTCGCAACATATCCTACCCATTTCGACTCAAAAGCGACCCAGGTCACTGCGGCGACCGAAGGTACGAGTTAGATTGCGTGAACAACGCCACTCTCTTACTAACCTTGTTCTCGGGAAAATACGATGTAAGAGAAATCGACTACAAGCGATACAGAATCGTTGTTAGGGACCCAGGTCAGGACGAAGACGCTAATTGCTCTTTCATCCCTCGCAATTTCTTAACGGATCGTAGTTTCAGGACAGCGAGTGGCCCAGATGATTTCGGATCACAGCCGTTCACTGTTGAGTCCAGGGAAATGGTAAGAATAGGGTACTTCAACTGCGTGAATCCTGTGCGTAACGATCCACGATATGTTAAGGTGGAGAGAAGTGGATGTGGCAGCGGAGGGCACGTGTACGCTGTATTGGACGACGCGCCGTGGTTTGCGTCTTATGGTGTGGAGGACATCAAGGTTGGGTGCGATCTAATGGTGGCTACACTTTGGACACCGAAGCAGAATGTTACCTACCACAAGTGTGATATCAAGGCTGGGTGCGATACAATGACGGAGGTTACAGTGCTTGAAAAGATACCGGAGGTGAATGCTACATACGATGATATCCAACGCGTAATCAGTGAGGGGTTTTGGTTGTCGTGGATGCCTATTATTTGCGATAATCGATGTGGAAGGGGAACGGACTGTAAGGTTTTCAATGAATCCAGTGGAGAAGTCGAGTGCAGGAACCATTACTGTCATTACGCCTACCACACCACGCAAAAGTGCAAACCTTGGCAAAAGATTTTGGGCTATACTCGAGCTTATGTTAGAGGCATTATTTATGGAATAGGTAGCAGAATAACATTCAGTACGAAACAGTTGGACGACCCAGTTGGACTGCAATATTTTGATGGAGGAATATTCATAGGACGAAATATTATATCAATATTTTTGGCTGCCAGATATGTGTTTGGAGCTGTACTTATTCTTGTGTTATTGATCTACAAATGGCGTCGAAGACATTCTTCAATATATGAAAATATTGAAAATTTCTTGCTAGATAGCCATCTAAATCCCATCAGGTACGAATATAATGAAATAAGAAGAATGACTAGAGGTTTTAAAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTATATAAAGGAAAACTACGAAGTGGATTAGATGTAGCTGTAAAGATGTTGAGCAAATCCAATGATAATGGACAAGATTTCATAAATGAAGTAGCTACCATTGGAACAATACATCATGTAAATGTGGTACGTCTTATTGGGTATTGTGTTCATGGAAAAAAACGTGCTTTAGTTTATGAATTTATGTTAAATGGATCTTTGGATAAATACATTTTCTCCAAAGAAGAAAGCACCCATTTAAGCTACCAGAAAATATATGAAATATCTCTTGGAATAGCACATGGGATTGCATATTTGCATCAAGGTTGTGATAAACAAATTTTACATTTTGATATCAAGCCTCATAATATTCTTTTAGATGAAAACTTTGTTCCAAAAGTTTCAGATTTTGGACTTGCAAAACTACATGCTACAATTGATGGTGTTGTCAATATGACTGCAGCAAGAGGAACATTGGGTTATATGGCTCCAGAGTTATTTTACAACAATATGGGTGGGGTAACTTATAAAGCTGATGTATACAGTTTTGGAATGCTTTTAATGGAAATGGCAAGTAAGAGAAGGAACTCAAATCCTGATGCGGAGCATTCAAGTCAACATTATTTTCCCTTTTGGATTTATGATCAATTTAAAAAAGAAAAGAATATTGACTTGCAAGATGCTTCGGAAGAAGATAATATTTTTGTTAAAAGAATGTTCTTAATTGCACTTTGGTGTATTCAGTTAAATCCAAGTGATCGTCCTTCAATGAACAAGGTAATAGATATGCTTGAAGGGATGATTGAAAGCCTTGGATTGCCTCCAAGACCTTCCTTTTATAAAGTTGAAGCATACAATGATGATATTAGCTCTGATGTCACTGAATCTACTTATCCTACTAATCATCATGATGAAAGCATAACATTGGATTCATCAACGAATATTGAAATAGGCATAAGATAA 2217 0.3956 MENEGWSRCSCSARTLVSVLATIILVFQPDYCIAKRHRPCPTSSCGQIRNISYPFRLKSDPGHCGDRRYELDCVNNATLLLTLFSGKYDVREIDYKRYRIVVRDPGQDEDANCSFIPRNFLTDRSFRTASGPDDFGSQPFTVESREMVRIGYFNCVNPVRNDPRYVKVERSGCGSGGHVYAVLDDAPWFASYGVEDIKVGCDLMVATLWTPKQNVTYHKCDIKAGCDTMTEVTVLEKIPEVNATYDDIQRVISEGFWLSWMPIICDNRCGRGTDCKVFNESSGEVECRNHYCHYAYHTTQKCKPWQKILGYTRAYVRGIIYGIGSRITFSTKQLDDPVGLQYFDGGIFIGRNIISIFLAARYVFGAVLILVLLIYKWRRRHSSIYENIENFLLDSHLNPIRYEYNEIRRMTRGFKVKLGQGGFGAVYKGKLRSGLDVAVKMLSKSNDNGQDFINEVATIGTIHHVNVVRLIGYCVHGKKRALVYEFMLNGSLDKYIFSKEESTHLSYQKIYEISLGIAHGIAYLHQGCDKQILHFDIKPHNILLDENFVPKVSDFGLAKLHATIDGVVNMTAARGTLGYMAPELFYNNMGGVTYKADVYSFGMLLMEMASKRRNSNPDAEHSSQHYFPFWIYDQFKKEKNIDLQDASEEDNIFVKRMFLIALWCIQLNPSDRPSMNKVIDMLEGMIESLGLPPRPSFYKVEAYNDDISSDVTESTYPTNHHDESITLDSSTNIEIGIR 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01216 738 SUPERFAMILY Protein kinase-like (PK-like) 397 683 IPR011009 -
Viun8g01216 738 FunFam PR5-like receptor kinase 487 693 - -
Viun8g01216 738 Gene3D Transferase(Phosphotransferase) domain 1 487 690 - -
Viun8g01216 738 ProSitePatterns Protein kinases ATP-binding region signature. 418 440 IPR017441 GO:0005524
Viun8g01216 738 Gene3D Phosphorylase Kinase; domain 1 390 486 - -
Viun8g01216 738 Pfam Wall-associated receptor kinase galacturonan-binding 40 104 IPR025287 GO:0030247
Viun8g01216 738 ProSiteProfiles Protein kinase domain profile. 412 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01216 738 Pfam Protein tyrosine and serine/threonine kinase 415 682 IPR001245 GO:0004672|GO:0006468
Viun8g01216 738 SMART serkin_6 412 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01216 738 FunFam serine/threonine-protein kinase PBS1-like 382 486 - -
Viun8g01216 738 CDD STKc_IRAK 418 685 - -
Viun8g01216 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Viun8g01216 738 PANTHER RUST RESISTANCE KINASE LR10-RELATED 385 702 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01216 Viun-Chr8 17157016 17164437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01216 359 695 Receptor kinase-like Gene Family AT4G18250 44.857 2.68e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01216 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01216 - - gmx:100820366 1036.94