Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01212 ATGAAAAGACCAGTAAGAATACCTATCGTCATCATTCTTCTACTTATACAAACTTGCACCGCCGCGCTCAGCTCCAACTGCCAAGCTTCCTCCTGCGGCAACATTCCCAACATAAGTTACCCCTTTCGACTCAGCAGTGACCCATCTCACTGCGGCGACGCCAGGTACCAATTGCAGTGTGAGAACAACACAACTCTTCTAGCCCTGTTTTCTGGTAAATACAGAGTCCAAGAAATCGATTACAAGAGATACAAAATCCGAGTGAGCGATGCGGAGGACGGTACCTGCTCCTCCATGCCTCGCTATTTCTTGCACTCCGGCAATTTTAGTAACGATCTCATCGGTCCTGGAAGGGATCCCCTGAAATTGGACCCATTTTTTCAACCGTCGATAGCGTATTTCAATTGCAGCGATCCAATCGCTGACGATCCAAGATATGTTGCTGTGGAAGCCAGGGGTTGCGACCTGAGAGGACACGTGTATGGTGTTGTTAGGGATTCGCGAAACGGTTTTGGTGTGAAGGACATCAAGGTTGGGTGCCAGCTGATGGTGGCTACTTTTGGTGGTGTGGGAGAGCACAAGTCCAACGGAGCAGTTTCGTATGGTGAAATCTTAAAAATGCTTTCACAGGGATTTGAGCTTTCTTGGTTGTATGTTATCTGTGAAAATCAATGCGGAAAGGGAATAGATTGCAGCGTTGTTGATGAATCCACAGATGAAGTTCGGTGTGGCCAGAAAGAATGCCGTTATATCTACGAACAACCTAACTCAGTCACATACCAATGCAGCGGCGGTAGTATTGCAGAAAACATAATTTCCGCAATAATTTTATTTTGTATCGGTCTTTACAGAGGATTGATGCAAATTTTTGGCTTGAATAAAGCTACAGGATATGATGGTGATATCGTAGCTGCCATGGGAACAAGTGTCGGAAGGTATATCTTTCCGTACTTTATAATACGATTTATATTTGGTGTGGTAGCTTTTGTTGTGTTGTTAATATATAAATGGGGAAAAAGACATAAATCAAAGTATGAAAATATTGAAACTTTTCTACAAGAAAACACCCTCGCTCCAATAAGGTACTCATATAAAGAAATACAACACATGACTAGGGGTTTTAAGGAAAAGCTAGGTCAAGGTGGATTTGGCTTGGTATACAAAGGAAAGTTGCGTAGTGGGTCATTTGTTGCGATAAAGATATTGAGTAAATCAAAGTCTAATGGACAAGATTTCATTAGTGAAGTTGGTACTATTGGAAGAATACATCATACAAATGTGGTGCGACTTATTGGATTTTGTGTTGAATCATCAAATCATGCTCTTGTTTATGAATTCATGCCTAATGGTTCTCTTGATAAATATATTTTTTCCAAGCAAGATGTTATCTCTTTAACTCATAGACAAATATATGAGATATCTCTTGGAGTGGCTCGTGGTATTGCTTATTTGCATGAAGGTTGTGACATTCAAATTTTGCATTTTGATATCAAGCCACATAACATCCTTTTGGACGAAAACTTTGTCCCAAAGGTTTCAGACTTTGGCTTGGCAAGACTTTATCCTACAGACAAAAGCATTATCACTTTGACTGATGTTAGGGGAACACTTGGATACATGGCACCCGAGTTATTTTATCATAATTTGGGAGGAGTATCATACAAGGCAGATGTTTATAGTTTTGGGATGCTTTTGATGGAAATGGCAAATAAGAAAAGAAATTTTAATGCACATGCAAATGATTCAAGTGAGTTTTTTTTCCCTCTTTGGATATATGATCAATTGAGTGAAGAAAATGAGATAGAAGGAGAAAGTGGTACCAAGCAAGAATACAAAGATGAGATAAAGAAGATGTTTTTAATAGCATTATGGTGTATACAATTAAAGTCAAGTGATCGTCCTCCCATGAACAAAGTAGTGGAGATGTTGGAAGGAGAACTTGAGAATATTGAAATGCCTCCAAAACCTTCCCTCTTTCATATAAATGATCACAAAAATAAATCCTATGAAACCTCTTCAAATGATGACAGTGGATGGACAAGTTATACCGAGGAAAGCATTGTTCATACTTCTTCTGAATATTCTACTTGA 2091 0.3931 MKRPVRIPIVIILLLIQTCTAALSSNCQASSCGNIPNISYPFRLSSDPSHCGDARYQLQCENNTTLLALFSGKYRVQEIDYKRYKIRVSDAEDGTCSSMPRYFLHSGNFSNDLIGPGRDPLKLDPFFQPSIAYFNCSDPIADDPRYVAVEARGCDLRGHVYGVVRDSRNGFGVKDIKVGCQLMVATFGGVGEHKSNGAVSYGEILKMLSQGFELSWLYVICENQCGKGIDCSVVDESTDEVRCGQKECRYIYEQPNSVTYQCSGGSIAENIISAIILFCIGLYRGLMQIFGLNKATGYDGDIVAAMGTSVGRYIFPYFIIRFIFGVVAFVVLLIYKWGKRHKSKYENIETFLQENTLAPIRYSYKEIQHMTRGFKEKLGQGGFGLVYKGKLRSGSFVAIKILSKSKSNGQDFISEVGTIGRIHHTNVVRLIGFCVESSNHALVYEFMPNGSLDKYIFSKQDVISLTHRQIYEISLGVARGIAYLHEGCDIQILHFDIKPHNILLDENFVPKVSDFGLARLYPTDKSIITLTDVRGTLGYMAPELFYHNLGGVSYKADVYSFGMLLMEMANKKRNFNAHANDSSEFFFPLWIYDQLSEENEIEGESGTKQEYKDEIKKMFLIALWCIQLKSSDRPPMNKVVEMLEGELENIEMPPKPSLFHINDHKNKSYETSSNDDSGWTSYTEESIVHTSSEYST 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01212 696 FunFam PR5-like receptor kinase 447 655 - -
Viun8g01212 696 Pfam Protein kinase domain 375 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01212 696 SUPERFAMILY Protein kinase-like (PK-like) 357 644 IPR011009 -
Viun8g01212 696 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Viun8g01212 696 FunFam serine/threonine-protein kinase PBS1-like 339 446 - -
Viun8g01212 696 PANTHER RUST RESISTANCE KINASE LR10-RELATED 344 665 IPR045874 GO:0004672
Viun8g01212 696 Gene3D Phosphorylase Kinase; domain 1 335 446 - -
Viun8g01212 696 MobiDBLite consensus disorder prediction 666 696 - -
Viun8g01212 696 Gene3D Transferase(Phosphotransferase) domain 1 447 655 - -
Viun8g01212 696 SMART serkin_6 372 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01212 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Viun8g01212 696 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524
Viun8g01212 696 MobiDBLite consensus disorder prediction 672 696 - -
Viun8g01212 696 ProSiteProfiles Protein kinase domain profile. 372 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01212 Viun-Chr8 17100966 17111870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01212 327 681 Receptor kinase-like Gene Family AT4G18250 46.575 2.45e-100 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01212 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01212 - - pvu:PHAVU_001G075800g 984.171