Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01211 ATGAAAAGACCAGTAAGAATACCTATCGTCATCATTCTTCTACTTATACAAACTTGCACCGCCGCGCTCAGCTCCAACTGCCAAGCTTCCTCCTGCGGCAACATTCCCAACATAAGTTACCCCTTTCGACTCAGCAGTGACCCATCTCACTGCGGCGACGCCAGGTACCAATTGCAGTGTGAGAACAACACAACTCTTCTAGCCCTGTTTTCTGGTAAATACAGAGTCCAAGAAATCGATTACAAGAGATACAAAATCCGAGTGAGCGATGCGGAGGACGGTACCTGCTCCTCCATGCCTCGCTATTTCTTGCACTCCGGCAATTTTAGTAACGATCTCATCGGTCCTGGAAGGGATCCCCTGAAATTGGACCCATTTTTTCAACCGTCGATAGCGTATTTCAATTGCAGCGATCCAATCGCTGACGATCCAAGATATGTTGCTGTGGAAGCCAGGGGTTGCGACCTGAGAGGACACGTGTATGGTGTTGTTAGGGATTCGCGAAACGGTTTTGGTGTGAAGGACATCAAGGTTGGGTGCCAGCTGATGGTGGCTACTTTTGGTGGTGTGGGAGAGCACAAGTCCAACGGAGCAGTTTCGTATGGTGAAATCTTAAAAATGCTTTCACAGGGATTTGAGCTTTCTTGGTTGTATGTTATCTGTGAAAATCAATGCGGAAAGGGAATAGATTGCAGCGTTGTTGATGAATCCACAGATGAAGTTCGGTGTGGCCAGAAAGAATGCCGTTATATCTACGAACAACCTAACTCAGTCACATACCAATGCAGCGGCGGATTGATGCAAATTTTTGGCTTGAATAAAGCTACAGGATATGATGGTGATATCGTAGCTGCCATGGGAACAAGTGTCGGAAGGTATATCTTTCCGTACTTTATAATACGATTTATATTTGGTGTGGTAGCTTTTGTTGTGTTGTTAATATATAAATGGGGAAAAAGACATAAATCAAAGTATGAAAATATTGAAACTTTTCTACAAGAAAACACCCTCGCTCCAATAAGGTACTCATATAAAGAAATACAACACATGACTAGGGGTTTTAAGGAAAAGCTAGGTCAAGGTGGATTTGGCTTGGTATACAAAGGAAAGTTGCGTAGTGGGTCATTTGTTGCGATAAAGATATTGAGTAAATCAAAGTCTAATGGACAAGATTTCATTAGTGAAGTTGGTACTATTGGAAGAATACATCATACAAATGTGGTGCGACTTATTGGATTTTGTGTTGAATCATCAAATCATGCTCTTGTTTATGAATTCATGCCTAATGGTTCTCTTGATAAATATATTTTTTCCAAGCAAGATGTTATCTCTTTAACTCATAGACAAATATATGAGATATCTCTTGGAGTGGCTCGTGGTATTGCTTATTTGCATGAAGGTTGTGACATTCAAATTTTGCATTTTGATATCAAGCCACATAACATCCTTTTGGACGAAAACTTTGTCCCAAAGGTTTCAGACTTTGGCTTGGCAAGACTTTATCCTACAGACAAAAGCATTATCACTTTGACTGATGTTAGGGGAACACTTGGATACATGGCACCCGAGTTATTTTATCATAATTTGGGAGGAGTATCATACAAGGCAGATGTTTATAGTTTTGGGATGCTTTTGATGGAAATGGCAAATAAGAAAAGAAATTTTAATGCACATGCAAATGATTCAAGTGAGTTTTTTTTCCCTCTTTGGATATATGATCAATTGAGTGAAGAAAATGAGATAGAAGGAGAAAGTGGTACCAAGCAAGAATACAAAGATGAGATAAAGAAGATGTTTTTAATAGCATTATGGTGTATACAATTAAAGTCAAGTGATCGTCCTCCCATGAACAAAGTAGTGGAGATGTTGGAAGGAGAACTTGAGAATATTGAAATGCCTCCAAAACCTTCCCTCTTTCATATAAATGATCACAAAAATAAATCCTATGAAACCTCTTCAAATGATGACAGTGGATGGACAAGTTATACCGAGGAAAGCATTGTTCATACTTCTTCTGAATATTCTACTTGA 2031 0.3959 MKRPVRIPIVIILLLIQTCTAALSSNCQASSCGNIPNISYPFRLSSDPSHCGDARYQLQCENNTTLLALFSGKYRVQEIDYKRYKIRVSDAEDGTCSSMPRYFLHSGNFSNDLIGPGRDPLKLDPFFQPSIAYFNCSDPIADDPRYVAVEARGCDLRGHVYGVVRDSRNGFGVKDIKVGCQLMVATFGGVGEHKSNGAVSYGEILKMLSQGFELSWLYVICENQCGKGIDCSVVDESTDEVRCGQKECRYIYEQPNSVTYQCSGGLMQIFGLNKATGYDGDIVAAMGTSVGRYIFPYFIIRFIFGVVAFVVLLIYKWGKRHKSKYENIETFLQENTLAPIRYSYKEIQHMTRGFKEKLGQGGFGLVYKGKLRSGSFVAIKILSKSKSNGQDFISEVGTIGRIHHTNVVRLIGFCVESSNHALVYEFMPNGSLDKYIFSKQDVISLTHRQIYEISLGVARGIAYLHEGCDIQILHFDIKPHNILLDENFVPKVSDFGLARLYPTDKSIITLTDVRGTLGYMAPELFYHNLGGVSYKADVYSFGMLLMEMANKKRNFNAHANDSSEFFFPLWIYDQLSEENEIEGESGTKQEYKDEIKKMFLIALWCIQLKSSDRPPMNKVVEMLEGELENIEMPPKPSLFHINDHKNKSYETSSNDDSGWTSYTEESIVHTSSEYST 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01211 676 Gene3D Transferase(Phosphotransferase) domain 1 427 635 - -
Viun8g01211 676 SMART serkin_6 352 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01211 676 Pfam Protein kinase domain 355 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01211 676 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Viun8g01211 676 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Viun8g01211 676 MobiDBLite consensus disorder prediction 652 676 - -
Viun8g01211 676 FunFam PR5-like receptor kinase 427 635 - -
Viun8g01211 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Viun8g01211 676 Gene3D Phosphorylase Kinase; domain 1 315 426 - -
Viun8g01211 676 FunFam serine/threonine-protein kinase PBS1-like 319 426 - -
Viun8g01211 676 SUPERFAMILY Protein kinase-like (PK-like) 337 624 IPR011009 -
Viun8g01211 676 PANTHER RUST RESISTANCE KINASE LR10-RELATED 324 645 IPR045874 GO:0004672
Viun8g01211 676 MobiDBLite consensus disorder prediction 646 676 - -
Viun8g01211 676 ProSiteProfiles Protein kinase domain profile. 352 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01211 Viun-Chr8 17100962 17111870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01211 9 670 Receptor kinase-like Gene Family AT5G38260 33.819 6.15e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01211 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01211 - - pvu:PHAVU_001G075800g 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01211 8 17100962 17111870 Viun8g01211 8 17100962 17111870 ECH