Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01210 ATGTGGAGAGAGAGTGCGTTGTTGGTGATTCTGCTGTTTCGACTTCAGCAAATTTGTGCTACTAAGCACTTTGATCATGCGTGTGCCCCTTCTTCCTGTGGCAAAATCACGAACATAACGCATCCATTCCGATTAAACGGTGACCCAGATCACTGCGGCGACAACAGGTATGAGCTCACCTGTGAAAATAACGTTACCGTTTTATCTTTGTACTCCGGAAAATACCATGTGCAGGCCATCAACTACAATAATTTCACAATCCGAGTGGTTGATCCGGGCGTTCGGCAATCAAATTGCTCCTCCATCCCTCGCTATTTCTTGTCTCGATCCAATTTCAGTGATACCTATGATTACATCAACATGGATAAGGATGCATACCAAAGTGGTCAGCGACGAGTATCTGATCAACCTATCTATTTTAATAATAGAAGGTGGAACGTGGTTCGTTCAAATCCGGTTTACGAACATGTAGTTTTCATGAATTGTAACCATTCAGTGAGTGACAATGGTAAGTATGTAGATACTGCTTCGTGCGTGAATTGGCAATCCAAAGGTTATACATATGCTATCGCTGGGGACCTAATATCAGAGGACTTAGAAGTTGGTTGTAATGTAGCACTGGTTACTCCCACATCTTGGTGGGGTTTGCACACACCTCAATATTCGTACAGTGAGATGCACAAGGCACTAGCCTATGGGTTTGAGATTTCGTGGATGAATCGCGCCTGCCAGGACATTTGCGTAAATTCAATGGGTAGCTCCTGCATATTGGACACTTCCGGGAGGGTTGATTGCTCCAACTGCCACAGGTTCCTGTCAATTTTGAGTATATGTGATGGCAGGCCAATATGGTACCAGCTTCTATTATATGCAAAAGATACTATTTATACTGCCTGGATAGGTCTGGTTGAAACAATAAAAGGACAAAAAGAATTTGATGGTGACGGCAACTATAAATTAGGTTTAATTATTGGACACTATGTTTTACCATCCTTCTTGGCATGCAAACTTTTGTTTGGGGTGATTTCATTTTTCGCACTGTTGATATACAAATGGAAAAGGCGGCATTTATCGATGTACGAAAACATCGAAAATTACTTGGAACATGCCAATTTGATGCCTATTAGATATTCATACAAGGAAATCAAGAAAATGACGGGAGGTTTCAAAGATAAATTGGGTGAAGGAGGATATGGTTCCGTGTTTAAGGGAAAGTTGTCTAGTAGATCTTATGTAGCAATAAAAATGTTAGATAAATCAAAAGGTATTGGACAAGATTTTTTTAATGAAGTTGCAACTATCGGAAAAATATATCATCAAAATATTGTAAAATTAGTTGGATTTTGTGTTGAAGGATCAAAACGTGCTCTTGTTTACGAATTTATGTCAAATGGATCTTTGGATAAAATTATTTTTTCCAAAGATGGAAATATACATTTAAGCTATGATGAAATATATAATATTTCAATTGGAATAGCTCAAGGGATTGCTTATCTTCACCATGGGTGTGAGATGAAAATTCTGCATTTTGATATTAAACCCCACAACATCTTAGTGGATGGAAAGCTCACCCCCAAGGTCTCTGATTTTGGATTGGCAAAATTATATCCAGTAGATAAGAGCATTGTCACAATGACAGGAGTAAGAGGAACCATTGGGTATATGGCTCCAGAATTATTTTATAATAACATTGGAAAAATATCTCACAAGGCTGATGTTTATAGTTTTGGAATGCTTCTGATGGAGATGACAAACAAAAGGAAAAACCTAAATTCTCATGCAGAACATTCAAGTCAACTATATTTTCCCTTTTGGATTTATAGATATATTGGAAAAGAAAAAGATATAGATATTGAAGACGTCAAAGAGGAAGAAAAGGAAGAAGTAAAGAAAATGATTATAGTTGCTCTTTGGTGCATACAGCTGAAACCAAATGATCGTCCCACGATGAGTGAAGTAGTTGAAATGCTTGAAGGAGACATTGAAAACCTGAAAATACCTCCAAAGCCTACTTTATATCCAGACGAAACAATGTCAAGTGACCTAAGCTTCACTGATTCTTCTAATTCTTCCATGTAA 2079 0.3785 MWRESALLVILLFRLQQICATKHFDHACAPSSCGKITNITHPFRLNGDPDHCGDNRYELTCENNVTVLSLYSGKYHVQAINYNNFTIRVVDPGVRQSNCSSIPRYFLSRSNFSDTYDYINMDKDAYQSGQRRVSDQPIYFNNRRWNVVRSNPVYEHVVFMNCNHSVSDNGKYVDTASCVNWQSKGYTYAIAGDLISEDLEVGCNVALVTPTSWWGLHTPQYSYSEMHKALAYGFEISWMNRACQDICVNSMGSSCILDTSGRVDCSNCHRFLSILSICDGRPIWYQLLLYAKDTIYTAWIGLVETIKGQKEFDGDGNYKLGLIIGHYVLPSFLACKLLFGVISFFALLIYKWKRRHLSMYENIENYLEHANLMPIRYSYKEIKKMTGGFKDKLGEGGYGSVFKGKLSSRSYVAIKMLDKSKGIGQDFFNEVATIGKIYHQNIVKLVGFCVEGSKRALVYEFMSNGSLDKIIFSKDGNIHLSYDEIYNISIGIAQGIAYLHHGCEMKILHFDIKPHNILVDGKLTPKVSDFGLAKLYPVDKSIVTMTGVRGTIGYMAPELFYNNIGKISHKADVYSFGMLLMEMTNKRKNLNSHAEHSSQLYFPFWIYRYIGKEKDIDIEDVKEEEKEEVKKMIIVALWCIQLKPNDRPTMSEVVEMLEGDIENLKIPPKPTLYPDETMSSDLSFTDSSNSSM 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01210 692 SUPERFAMILY Protein kinase-like (PK-like) 372 658 IPR011009 -
Viun8g01210 692 FunFam PR5-like receptor kinase 462 669 - -
Viun8g01210 692 Gene3D Phosphorylase Kinase; domain 1 361 461 - -
Viun8g01210 692 MobiDBLite consensus disorder prediction 668 692 - -
Viun8g01210 692 Pfam Protein kinase domain 390 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01210 692 SMART serkin_6 387 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01210 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Viun8g01210 692 Gene3D Transferase(Phosphotransferase) domain 1 462 666 - -
Viun8g01210 692 PANTHER RUST RESISTANCE KINASE LR10-RELATED 360 678 IPR045874 GO:0004672
Viun8g01210 692 FunFam serine/threonine-protein kinase PBS1-like 356 461 - -
Viun8g01210 692 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Viun8g01210 692 ProSiteProfiles Protein kinase domain profile. 387 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01210 692 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Viun8g01210 692 MobiDBLite consensus disorder prediction 676 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01210 Viun-Chr8 17038012 17042145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01210 28 689 Receptor kinase-like Gene Family AT5G38260 32.836 2.01e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01210 Pkinase 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01210 - - gmx:100305367 857.825