Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01209 ATGGCGGAGTCTAGTGTGCTACCTCTCCAAGGTGATTCCTTATTGATAACACTACTGTTAATGTTCTTGCTTATCGTAAGTAGCAGCAGTCAAAACTGTGGGTTTCAACAACCGCCTATTAGATTTCCCTTCCAACTCGTTCACGGGATGAAAAATGCATGTAACTCTCCTGGTTTGTGTGTATATTGTAGTGAAAATAATGAGACCATGCTTGTTCACCCTACACTGAAACTCCGTGTGACATACATAAACTACCAATCTCAGATTATTTACTTGGAAGATCCAGAAAATTGCCTTCCGCAGAAATTTCTAAACCTCAACAATTTTACTATTCCGCCTTACGAATTTGATTCATCCGATGGACGACTAACATACTACTTGAATTTCTTCGATTGTTCTTCACTTGGGCTTCCACACCTCAGAAACAGGGACCAGATATCCACTAGTTCGCAAGACATGATTCGTTGTCCGACTTACGTTTCTAACTCTTACGAAAGCGTCCTTGAATTGGACCTAACATCTTGTTCCAAGATGTCCAACATCTTTTCGCAGGTATCGGCATCTGTCCTGCGGGTGAATCAGTTGAATTTGAAATGGTCTAAACCAAATTGTGGTGAGTGCGAAGCAAAAGGCAAAAGATGTCAATGGAAGAACAACAGCACAACGGAAATCGAATGTGTATCCAGTCCCAAACGAAGAATTCACATTTCCAAACAGTCTATTTTCATTGCTACAGGTTCTATTGTTTTGGGGCTGGTGGTTATTGCAGTGTTTAAGATGGTCCACCACTTTAGAAAGAAAGAAGAAGACCAAGCTAGAGTGGATAAGTTTCTGGAGGATTACAGGGCAGACAAGCCTGCAAGATTTACCTATGCTGATGTAAAAAGAATCACTGGTGGTTTTAAAGAAAAGTTAGGGGAAGGAGCTCATGGAGCTGTGTTCAGAGGAAAACTTTCAAATGAGATTCTCGTGGCTGTGAAGATCCTCAATAATACAGAGGGAGATGGGAACGATTTCATCAATGAAGTTGGAATTATGGGAAAAATCCACCACATCAACGTGGTTCGTTTGCTTGGTTTTTGTGCAGAGGGACTCCATCGTGCTCTTGTCTACAATCTGTTTCCAAACGGTTCGCTACAAAGCTTCATATTTCCACCGGAGGACAATGACCATTTTCTTGGCTGGGAGAAGCTGCAGCACATTGCTCTTGGCATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGTGACCGTCCCATTATTCACTTTGACATCAACCCTCACAATGTGTTACTCGATGAAAACTTCACCCCCAAAATTTCTGACTTTGGTTTAGCCAAATTGTGTTCAAAGAATCCAAGTTTGGTGTCCATGACAGCAGCAAGGGGGACCTTGGGATACATTGCGCCAGAAGTTTTTTCCAGAAACTTTGGAAATGTGTCTTACAAATCTGATATATACAGTTATGGAATGTTGTTGTTGGAAATGGTTGGAGGAAGGAAGAATGTGGACATATCTTCAGCACAAAATTTTAATGTTCTGTACCCGGATTGGATCCATAACCTGGTTGATGGAGATATCCATATCCATGTTGAGGATGAAGGTGAAGTTAACATTGCAAAGAAACTAGCAATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACAGACCATCCATAAAATCTGTCATACAGATGTTAGAAAGTGCAGAGGAAAACCAGTTAACTGTTCCTCCTAACCCATTTCACTCAACGTCTTCCACTTCTACTGGTAGACTCATTTCAACAAGACGTCCTATGGAGTTGGATGTGATTCAAGAATGA 1827 0.4138 MAESSVLPLQGDSLLITLLLMFLLIVSSSSQNCGFQQPPIRFPFQLVHGMKNACNSPGLCVYCSENNETMLVHPTLKLRVTYINYQSQIIYLEDPENCLPQKFLNLNNFTIPPYEFDSSDGRLTYYLNFFDCSSLGLPHLRNRDQISTSSQDMIRCPTYVSNSYESVLELDLTSCSKMSNIFSQVSASVLRVNQLNLKWSKPNCGECEAKGKRCQWKNNSTTEIECVSSPKRRIHISKQSIFIATGSIVLGLVVIAVFKMVHHFRKKEEDQARVDKFLEDYRADKPARFTYADVKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKILNNTEGDGNDFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNLFPNGSLQSFIFPPEDNDHFLGWEKLQHIALGIAKGIEYLHQGCDRPIIHFDINPHNVLLDENFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDISSAQNFNVLYPDWIHNLVDGDIHIHVEDEGEVNIAKKLAIVGLWCIQWQPVNRPSIKSVIQMLESAEENQLTVPPNPFHSTSSTSTGRLISTRRPMELDVIQE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01209 608 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Viun8g01209 608 FunFam PR5-like receptor kinase 374 579 - -
Viun8g01209 608 ProSiteProfiles Protein kinase domain profile. 299 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01209 608 FunFam S-receptor-like serine/threonine-protein kinase 266 373 - -
Viun8g01209 608 Gene3D Phosphorylase Kinase; domain 1 272 373 - -
Viun8g01209 608 PANTHER RUST RESISTANCE KINASE LR10-RELATED 271 587 IPR045874 GO:0004672
Viun8g01209 608 Gene3D Transferase(Phosphotransferase) domain 1 374 581 - -
Viun8g01209 608 SUPERFAMILY Protein kinase-like (PK-like) 283 569 IPR011009 -
Viun8g01209 608 Pfam Protein tyrosine and serine/threonine kinase 301 568 IPR001245 GO:0004672|GO:0006468
Viun8g01209 608 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01209 Viun-Chr8 17035485 17037745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01209 10 582 Receptor kinase-like Gene Family AT5G38260 35.610 1.32e-98 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01209 PK_Tyr_Ser-Thr 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01209 - - gmx:100813645 879.782