Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01208 ATGATTCGTTGTCCGACTTACGTTTCTAACTCTTACGAAAGCGTCCTTGAATTGGACCTAACATCTTGTTCCAAGATGTCCAACATCTTTTCGCAGGTATCGGCATCTGTCCTGCGGGTGAATCAGTTGAATTTGAAATGGTCTAAACCAAATTGTGGTGAGTGCGAAGCAAAAGGCAAAAGATGTCAATGGAAGAACAACAGCACAACGGAAATCGAATGTGTATCCAGTCCCAAACGAAGAATTCACATTTCCAAACAGTCTATTTTCATTGCTACAGGTTCTATTGTTTTGGGGCTGGTGGTTATTGCAGTGTTTAAGATGGTCCACCACTTTAGAAAGAAAGAAGAAGACCAAGCTAGAGTGGATAAGTTTCTGGAGGATTACAGGGCAGACAAGCCTGCAAGATTTACCTATGCTGATGTAAAAAGAATCACTGGTGGTTTTAAAGAAAAGTTAGGGGAAGGAGCTCATGGAGCTGTGTTCAGAGGAAAACTTTCAAATGAGATTCTCGTGGCTGTGAAGATCCTCAATAATACAGAGGGAGATGGGAACGATTTCATCAATGAAGTTGGAATTATGGGAAAAATCCACCACATCAACGTGGTTCGTTTGCTTGGTTTTTGTGCAGAGGGACTCCATCGTGCTCTTGTCTACAATCTGTTTCCAAACGGTTCGCTACAAAGCTTCATATTTCCACCGGAGGACAATGACCATTTTCTTGGCTGGGAGAAGCTGCAGCACATTGCTCTTGGCATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGTGACCGTCCCATTATTCACTTTGACATCAACCCTCACAATGTGTTACTCGATGAAAACTTCACCCCCAAAATTTCTGACTTTGGTTTAGCCAAATTGTGTTCAAAGAATCCAAGTTTGGTGTCCATGACAGCAGCAAGGGGGACCTTGGGATACATTGCGCCAGAAGTTTTTTCCAGAAACTTTGGAAATGTGTCTTACAAATCTGATATATACAGTTATGGAATGTTGTTGTTGGAAATGGTTGGAGGAAGGAAGAATGTGGACATATCTTCAGCACAAAATTTTAATGTTCTGTACCCGGATTGGATCCATAACCTGGTTGATGGAGATATCCATATCCATGTTGAGGATGAAGGTGAAGTTAACATTGCAAAGAAACTAGCAATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACAGACCATCCATAAAATCTGTCATACAGATGTTAGAAAGTGCAGAGGAAAACCAGTTAACTGTTCCTCCTAACCCATTTCACTCAACGTCTTCCACTTCTACTGGTAGACTCATTTCAACAAGACGTCCTATGGAGTTGGATGTGATTCAAGAATGA 1371 0.4165 MIRCPTYVSNSYESVLELDLTSCSKMSNIFSQVSASVLRVNQLNLKWSKPNCGECEAKGKRCQWKNNSTTEIECVSSPKRRIHISKQSIFIATGSIVLGLVVIAVFKMVHHFRKKEEDQARVDKFLEDYRADKPARFTYADVKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKILNNTEGDGNDFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNLFPNGSLQSFIFPPEDNDHFLGWEKLQHIALGIAKGIEYLHQGCDRPIIHFDINPHNVLLDENFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDISSAQNFNVLYPDWIHNLVDGDIHIHVEDEGEVNIAKKLAIVGLWCIQWQPVNRPSIKSVIQMLESAEENQLTVPPNPFHSTSSTSTGRLISTRRPMELDVIQE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01208 456 PANTHER RUST RESISTANCE KINASE LR10-RELATED 119 435 IPR045874 GO:0004672
Viun8g01208 456 Gene3D Phosphorylase Kinase; domain 1 119 221 - -
Viun8g01208 456 Gene3D Transferase(Phosphotransferase) domain 1 222 429 - -
Viun8g01208 456 FunFam S-receptor-like serine/threonine-protein kinase 113 221 - -
Viun8g01208 456 ProSiteProfiles Protein kinase domain profile. 147 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01208 456 ProSitePatterns Protein kinases ATP-binding region signature. 153 175 IPR017441 GO:0005524
Viun8g01208 456 Pfam Protein tyrosine and serine/threonine kinase 149 416 IPR001245 GO:0004672|GO:0006468
Viun8g01208 456 FunFam PR5-like receptor kinase 222 427 - -
Viun8g01208 456 SUPERFAMILY Protein kinase-like (PK-like) 131 417 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01208 Viun-Chr8 17035485 17037749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01208 96 431 Receptor kinase-like Gene Family AT4G18250 43.353 3.50e-96 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01208 PK_Tyr_Ser-Thr 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01208 - - gmx:100813645 764.607