Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01203 ATGGGTCGTTTATCAGAGTCGAAGTTGGTTCAAGAGCTGGTTCTGTACGCCGGTAGCGCAGCACTGAGTTGTTTGGTCTTGTTTGTTGGCCTCCGACAACTCGACCCTAATCGTGAGGCTTCAAAGAAGGCCCTTCACCACAAAAAGGAGATAGCCAAACGCCTTGGTCGTCCTCTTGTTAACACAAACCCTTACGAGGATGTCATAGCATGCGATGTTATCAATCCTGACCACATTAATGTGGAGTTTAACTCTATCGGAGGACTGAAAACGACAAAACAAGCTCTATATGAACTTGTAATTCTGCCTCTAAGAAGACCTGACTTGTTTTCTCATGGTAAACTTCTTGGGCCACAAAAGGGTGTCCTTCTGTATGGACCACCTGGCACGGGGAAGACCATGCTTGCCAAAGCTATTGCTAAGGAGTCTGGAGCAGTTTTCATCAATGTTAGGATATCAAACCTGATGAGCAAGTGGTTTGGAGATGCCCAGAAACTTGTGAGTGCCATATTTAGCCTAGCTCATAAGCTCCAGCCTGCCATCATATTCATTGATGAAGTTGACAGCTTTTTGGGCCAGCGTCGTCAAACAGATCACGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGTTTTACTACTGATCAGAATGCTCAAGTTATGGTCCTTGCTGCTACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGACGACTTCCTCAAGCATTTGAAATTGGTATTCCGGACCAAAAGGAGAGGGCTGAGATATTGAATGTTATCTTGAAGGGTGAGAGGATTGAAGAAAACATAGACTTTGACCATATAGCTTTCTTATGTGAAGGTTACACCGGTTCGGATCTATTTGACCTGTGCAAGAAAGCTGCATATTTTCCAATTAGAGAACTTCTGGATGAAGAGAAGAAAGGGAGAAGTGTTTCTGCTCCTAGACCATTGTCCCAGGTAGACTTGGAGAAGGCCCTGGCAACATCACGAAAGACTACTGTTGCTGCATTTGAATACAATGGATTAAGTGCAGATACTCTAAGATGGGCAAGGCAAAGGGAACCTGGTGGTGATTATCAGGTTCAAGCTGCCATTAATGAACTCTCTAAGTTTGTGGTATCTCACATGACTAGTCGCCAGCCAGATGCGACAGATCTTTAA 1179 0.4419 MGRLSESKLVQELVLYAGSAALSCLVLFVGLRQLDPNREASKKALHHKKEIAKRLGRPLVNTNPYEDVIACDVINPDHINVEFNSIGGLKTTKQALYELVILPLRRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVSAIFSLAHKLQPAIIFIDEVDSFLGQRRQTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQKERAEILNVILKGERIEENIDFDHIAFLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGRSVSAPRPLSQVDLEKALATSRKTTVAAFEYNGLSADTLRWARQREPGGDYQVQAAINELSKFVVSHMTSRQPDATDL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01203 392 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Viun8g01203 392 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Viun8g01203 392 Gene3D - 80 338 IPR027417 -
Viun8g01203 392 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Viun8g01203 392 Pfam AAA+ lid domain 274 310 IPR041569 -
Viun8g01203 392 CDD RecA-like_ATAD1 85 250 - -
Viun8g01203 392 SMART AAA_5 118 254 IPR003593 GO:0016887
Viun8g01203 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Viun8g01203 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 12 365 - -
Viun8g01203 392 Gene3D - 253 333 - -
Viun8g01203 392 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01203 Viun-Chr8 16925827 16932285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01203 81 312 Calmodulin-binding Proteins AT3G56690 34.034 3.59e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01203 K22530 - gmx:100791694 701.049