Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01196 ATGGCGTCATCAATTCCTTCCACGGAATTCGCCTCTTCAAATTCGAAACTTCCACGGAAATACGACGTGCTAATCAACTTCACTGGAGAAGACATTCGCAGGAAATTTGTTTCTCATCTCGATTCTGCTCTCTCTAATGTTGGGCTCTCCACTTTCCTTTACGTGGAGAATGCAGTGAAGGGCATGCACATCCAACAACCTATTCTCAATCTGTGTCGGGTAGCAATAGTTGTTTTCACCAAAACCTATTCTGAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATTAAATGGCAAGAAACTTACTCACGACATCTTTTGCCTGTATTTTACGAAATTGAACCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAGAAGCCTTCAAAGCAACTGCACATCAAACATTTTCAGGCATGTCCATGGAGCATGACATGTCCAGTTGGAGCCACGCACTCACCAAAGCAGCAAGTTTCTTTGGATGGGATGAGAGTAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGTGTTCTTAATTTACCGGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCGCGTGAAAGGTGTGATTGAGATTATACAAAATAAATCCATGGAAGTTTGTCTAATAGGGATATGTGGAGAGCGAGGATCGGGTAAAACCACCCTTGCCAAAGCTATCTACCATCAAATTCATAGTACATTCACAGAGAAAAGTTTTATTGAAGATATTGCACAAGTTAGTCAAACAAGAGGGCATGTTCATTTACAAGAACAACTTCTTTCGGATGTCCTAAAAACAAAGATGAATATACCTAGCGTTGAGATGGGAAGAAGTATAATTCGGGAAAAACTTCATGGGAAAAAATTGCTCCTTGTACTTGACGATACTAAATACGAACCATTATTAGACCTATGGGATAGTCATGTATGGTTCGCTAAAGGAACTGTCATAATAATTACTGCAAGAGAAGAACACCTACAGAGGATACCTCAGATTGATTCTGTTTTTAATGTAAATTTGTTGAGAGAAAATGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGAAAAACCAAAAGAAGAATACAATTACCTTGCAAAAAGAGTAGCTGATTATTGCAGAGGACTACCTCTTGCTCTTGAAGTCATTGGAAGTAGTTTATTTGAAAGGACGAAAGAAGAATGGGAGAGTGTGTTGTTAGAATTAAAGGAAATTCCCAGGCTTGATGTCCATCGGAAATTGAAAATAAGCTTCAACAATTTACGCAATGAAATGGAAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAAGGCAGAGCCTTCGTTACAAAGATCCTAAACGACTGTGGAGTAGATGCTGATAGTGGAATAAGAATTCTCATAGAACGTAACCTCATACAAGTTAGAAAGAACAACAAATTAGGAATGCAACCGTTGCTACGAAAAATGGGAAGAAAAATTATTCGTGAAATTTCAGGAAAGGAACTTGGGAAGAACCCTCAACTATGGTTTGGTCAGGATGCAGAATATGCAATGTTAGAGAATACTCTCTTCTCATCACACCGGACAAAAGTCATTCAGAAATTGCCTTTCAAGATGCTTGTAATAGCCACAAGAGACTTATTCGAACGTTATCCTTTAGTGATAAGAGACACATCAAGGACTCGGAAACTCACTGAAGATTTTGGGAAACTGAGATGGATCAATTTGCAAGGGTTTACTTCAGAATACCTACCTAACGACTTTAATCTGCATGATGCAATGGCAATTGATTTAAAACACAGTCTTCTTCTATTAGTCTGGAAAGAACATCAGGTTTTGAAGTGGCTAAAAGTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACTCCTGACTTTTCTGGACTACCACGTCTTGAAAAACTCATTCTCAAAGATTGTCCAAGATTGCGCAAAGTACACCCGTCTGTTGGATGTCTCAGCAATCTTATATTGCTAAATTTGAAGGATTGTACAAGTCTAAGCAATCTCCCAAGAGAGCTGTGA 2070 0.3865 MASSIPSTEFASSNSKLPRKYDVLINFTGEDIRRKFVSHLDSALSNVGLSTFLYVENAVKGMHIQQPILNLCRVAIVVFTKTYSESAWCLHQLQQIIKWQETYSRHLLPVFYEIEPSDVRLQKGDFGEAFKATAHQTFSGMSMEHDMSSWSHALTKAASFFGWDESNYRSDAELVDKIVKSVLNLPVLSATKFPVGLQSRVKGVIEIIQNKSMEVCLIGICGERGSGKTTLAKAIYHQIHSTFTEKSFIEDIAQVSQTRGHVHLQEQLLSDVLKTKMNIPSVEMGRSIIREKLHGKKLLLVLDDTKYEPLLDLWDSHVWFAKGTVIIITAREEHLQRIPQIDSVFNVNLLRENESLELLSWHAFREEKPKEEYNYLAKRVADYCRGLPLALEVIGSSLFERTKEEWESVLLELKEIPRLDVHRKLKISFNNLRNEMEKDLFLDVCCFFVGKGRAFVTKILNDCGVDADSGIRILIERNLIQVRKNNKLGMQPLLRKMGRKIIREISGKELGKNPQLWFGQDAEYAMLENTLFSSHRTKVIQKLPFKMLVIATRDLFERYPLVIRDTSRTRKLTEDFGKLRWINLQGFTSEYLPNDFNLHDAMAIDLKHSLLLLVWKEHQVLKWLKVLNLSHSKYLRETPDFSGLPRLEKLILKDCPRLRKVHPSVGCLSNLILLNLKDCTSLSNLPREL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01196 689 PRINTS Disease resistance protein signature 666 682 - -
Viun8g01196 689 PRINTS Disease resistance protein signature 217 232 - -
Viun8g01196 689 PRINTS Disease resistance protein signature 292 306 - -
Viun8g01196 689 PRINTS Disease resistance protein signature 384 398 - -
Viun8g01196 689 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun8g01196 689 Pfam TIR domain 20 183 IPR000157 GO:0007165
Viun8g01196 689 Gene3D - 349 433 IPR042197 -
Viun8g01196 689 Gene3D Ribonuclease Inhibitor 558 689 IPR032675 -
Viun8g01196 689 Pfam NB-ARC domain 201 432 IPR002182 GO:0043531
Viun8g01196 689 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 163 IPR035897 -
Viun8g01196 689 SUPERFAMILY L domain-like 573 686 - -
Viun8g01196 689 Gene3D - 18 180 IPR035897 -
Viun8g01196 689 Gene3D - 181 341 IPR027417 -
Viun8g01196 689 SUPERFAMILY "Winged helix" DNA-binding domain 424 522 IPR036390 -
Viun8g01196 689 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 688 IPR044974 GO:0006952
Viun8g01196 689 SMART till_3 20 160 IPR000157 GO:0007165
Viun8g01196 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01196 Viun-Chr8 16740833 16743674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01196 6 686 WRKY Transcription Factor Family AT4G12020 26.545 1.25e-57 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01196 - - pvu:PHAVU_010G029000g 905.975