Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01194 ATGGAGTTCGCTTCTTCTTCTTCTTCATCATCATCTTCTTCCTTCTTAAAATCAGAATCCAATTTCATATACGATGCGTTCGTCAACTTTGGCGGAGAAGACATCCGTAGAAAGTTTGTTTCTCATCTCCATTATGTTATTTTACAAGCTAAGGTCAAAACATTGATTAAGGAAGAGAATCTACATGAGGGAATGAAGATGGAAGAACACTTGCGAGCAATAGCAAGCTCTAAGATTGCAATTATCGTTTTCTCCAAAACATACACTGAATCTACCTGTTGTCTTCTTGAGCTTGAACAAATCATTGAATGTGTAGCAACTTTTGGTCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCATTGGATGTACGTCATCAGAAGGATGATTTTGGAAAAGCATTGGAAGAAACTGCACGCAAAAGCTATTCAGGAGAACAACTGGAACTTTCATTGTCCAAGTGGAGCCGTGCACTCACCACAGCCGCAGGTATCACTGGTTTGGATCTCAGAAATTTCAGGCATGATGCCGAACTTGTGGAGGCAATTGTTAGCCGCGTTCAAACATTGTTGGACTATTCAGAGTTGCCTATTACCCGATTCCCTGTTGGATTAGAGTCCCACGTGAAAAGGGTGATTAGATGTATCGAAAATCATTCCACCGAAGTCTGTATGATAGGAATATGGGGAATGGGAGGATCGGGTAAAACTACTGTAGCCAAAGCCATCTATAATCGAATTTATCGTACATTCATTGGTAAGAGTTTTATTGAAAATATTAGAGATTGGGATCTAGTAAATAGCAAAAATGTTGATTTGCAAGAAAATCTTCTTTATGAAGTCCTAAAATCAAAGTTCGGGTTCAAAAGCACTTGGATGGGAAGAACTATCATCGAGAACGAACTTTGTCGAAAAAAGGTGCTCATTGTGCTTGATGATGTGAATGAGTTTAGCCAATTAGAAAACCTATGCGGGAGTTGTGAATGGTTCGGTCAAGGATCTGTGATAATCATTACAACTAGAGATGTTCAATTGCTGAACCGACTTAAAGTTAATTATGTTTATGAAATGGATGTTATGAACCAAAATGATTCCCTTGAACTTTTTAGTTGGCATGCCTTTAGAGAAGCAAAACCAAGAAAAGACTTAAATGAACTTGCAAGAAACATAGTTGTTTATTGTGGAGGACTACCACTAGCTCTTAAGGTCCTTGGTTCCTTTTTATATGGTAGGACAATGGAAGAGTGGGAAAATGTACCGTCAAAACTAAAAGTAATTTCCATTGATCAAGTTCAAGAGAAATTGAAAATAAGTTTTGACGATTTACGTGAAATGGAAAAAGATATATTTCTTGATATATGTTGTTTCTTTATTGGTAAAGAGAGAAACTATGTCACAGATGTATTAAATGGCTGTGGACTACATGCTAATATTGGAATAAAAGTTCTCATAGAACGTGGCCTCATAAAAGTTGGAAGGAACAACAAACTTAAAATGCATCCTTTGTTTCGAGACATGGGAAGAGAAATTATTTTTCAGAGATGCCCAAAGGAACCGTGGAAAAGGAGTCGACTATGGTTTCAGGATGATGTAAAAGATGTACTGAAAAATAATACTGGAACAGAAGCTACCCAGGGATTGTCCCTGAAACTACATTCAACCAGCACAGATTGCTTTGAAGCCCATGCCTTCAAGGAAATGAAGAGATTAAGACTTCTACAATTGGATCGTGTACAACTTAATGGAGATTATGGCTACGTTTCTAAACAACTCAGATGGATTTGTTGGCAAGGGTTTCTTTCTAAATACATTCCAAACAACTTTCATATGGAAAATGTAATTGCAATTGATTTAAAACGTAGTCATCTTCAACTCGTCTGGAAACAACCCCAGGTTTTAGAGTGGTTAAAATTCCTTAATCTTAGTCACTCGAAGTTCTTAAGAGAAACACCTGACTTTTCAGGACTACCAAGTCTTGAAAAGCTCATTCTAAAAGATTGCCCAAGTTTGTACAAGGTACACGAATCCATTGGAAATCTCTGCAACCTACTACTGATCAATTTGAAAGACTGCACAAGTCTAATCAGTCTCCCCAGAGAGGTATATAAGTTGAAATCTTTGAGAACTTTCATCCTCTCTGGTTGTTTCAAGATTGACATATTGAAAGAAGATATAGTGAAGATGGAATCCTTGATAACTCTAGTTACTGAAAATACAGCTCTGAAACAAGTGCCCTGTTCAATTTTAAGCTCAAAAAGCATTGCATATATATCCCTATATGGATTTGGAGGATTGTCACATCATATTATTCCTTCTGCTATTCGGTCTTGGATGTTGCCAACAAGGAATCCCCAATCTTTTATTCGTCCGTTTTGCGTGGATAAGGAGAATAATAATTGGGGTGACCTTGCCCCATTGCATAACAGCCTTGCAAATATTCGAAGTGTTTTGGTTCAATTTGACACAGAGTTTCAACTATATAGGCACCTAAAAACAATTCTTTTCGAATGCGGTGCTGATTTTACACAATCAAAAATTTCAAAGGATCAGTTGAGATTTTCTTCGATTGGTATTGGAAGTTACAAGGAGTTCTTCAACACTCTCAGCGATAGCGTTTCTGAGGGATTGACCAACAGTGAGTCTTGTTATGTTTCTCTTCCAAGTGACAACTATCCTTACTGGTATGCCCATATGGGTGAGGGACATTCCGTTTCTTTCACTGTGCCTCACAATAGTGACATGAAGGGAATGGCTTTGTGTGTTGTTTATTCATCAACCTCCAAAATCATTGAACCTGAATGTCTTTCTAGTGTCTTAATTGCTAATTACACAAAGTGTACATGCCAGATATACAACCATGGCACAATAATTTCCTTTAAGGATGAGGATTGGAATGGCATAGTGTCAAATTTAGGATTCGGAGATAAGGTGGAGATTTTTGTGACTTTTGATCAAGGATTGGTAGTCAAGAACACAACTATCTATCTTATATATGGTGAATCAAATGGCTTAGAAATGGACCCTTGCCCTGAGCCAAAGGTAAATGCCCTTGACAAATTCATTAAGAAAATGGTGAGGTGTGACTACTGGTAA 3093 0.3757 MEFASSSSSSSSSSFLKSESNFIYDAFVNFGGEDIRRKFVSHLHYVILQAKVKTLIKEENLHEGMKMEEHLRAIASSKIAIIVFSKTYTESTCCLLELEQIIECVATFGQIVLPVFYEIDPLDVRHQKDDFGKALEETARKSYSGEQLELSLSKWSRALTTAAGITGLDLRNFRHDAELVEAIVSRVQTLLDYSELPITRFPVGLESHVKRVIRCIENHSTEVCMIGIWGMGGSGKTTVAKAIYNRIYRTFIGKSFIENIRDWDLVNSKNVDLQENLLYEVLKSKFGFKSTWMGRTIIENELCRKKVLIVLDDVNEFSQLENLCGSCEWFGQGSVIIITTRDVQLLNRLKVNYVYEMDVMNQNDSLELFSWHAFREAKPRKDLNELARNIVVYCGGLPLALKVLGSFLYGRTMEEWENVPSKLKVISIDQVQEKLKISFDDLREMEKDIFLDICCFFIGKERNYVTDVLNGCGLHANIGIKVLIERGLIKVGRNNKLKMHPLFRDMGREIIFQRCPKEPWKRSRLWFQDDVKDVLKNNTGTEATQGLSLKLHSTSTDCFEAHAFKEMKRLRLLQLDRVQLNGDYGYVSKQLRWICWQGFLSKYIPNNFHMENVIAIDLKRSHLQLVWKQPQVLEWLKFLNLSHSKFLRETPDFSGLPSLEKLILKDCPSLYKVHESIGNLCNLLLINLKDCTSLISLPREVYKLKSLRTFILSGCFKIDILKEDIVKMESLITLVTENTALKQVPCSILSSKSIAYISLYGFGGLSHHIIPSAIRSWMLPTRNPQSFIRPFCVDKENNNWGDLAPLHNSLANIRSVLVQFDTEFQLYRHLKTILFECGADFTQSKISKDQLRFSSIGIGSYKEFFNTLSDSVSEGLTNSESCYVSLPSDNYPYWYAHMGEGHSVSFTVPHNSDMKGMALCVVYSSTSKIIEPECLSSVLIANYTKCTCQIYNHGTIISFKDEDWNGIVSNLGFGDKVEIFVTFDQGLVVKNTTIYLIYGESNGLEMDPCPEPKVNALDKFIKKMVRCDYW 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01194 1030 Gene3D - 17 189 IPR035897 -
Viun8g01194 1030 PRINTS Disease resistance protein signature 301 315 - -
Viun8g01194 1030 PRINTS Disease resistance protein signature 654 670 - -
Viun8g01194 1030 PRINTS Disease resistance protein signature 394 408 - -
Viun8g01194 1030 PRINTS Disease resistance protein signature 225 240 - -
Viun8g01194 1030 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 193 - -
Viun8g01194 1030 Pfam NB-ARC domain 206 440 IPR002182 GO:0043531
Viun8g01194 1030 Pfam TIR domain 24 187 IPR000157 GO:0007165
Viun8g01194 1030 Gene3D - 359 443 IPR042197 -
Viun8g01194 1030 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Viun8g01194 1030 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 167 IPR035897 -
Viun8g01194 1030 Gene3D - 190 354 IPR027417 -
Viun8g01194 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 453 IPR027417 -
Viun8g01194 1030 Gene3D Ribonuclease Inhibitor 512 800 IPR032675 -
Viun8g01194 1030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 738 IPR044974 GO:0006952
Viun8g01194 1030 SUPERFAMILY L domain-like 512 772 - -
Viun8g01194 1030 Coils Coil 428 448 - -
Viun8g01194 1030 SMART till_3 23 165 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01194 Viun-Chr8 16734005 16738394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01194 24 748 WRKY Transcription Factor Family AT4G12020 28.016 1.66e-69 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01194 - - pvu:PHAVU_010G027900g 1412.13