Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01193 ATGGAGTTCGCTTCTTCTTCTTCTTCATCATCATCTTCTTCCTTCTTAAAATCAGAATCCAATTTCATATACGATGCGTTCGTCAACTTTGGCGGAGAAGACATCCGTAGAAAGTTTGTTTCTCATCTCCATTATGTTATTTTACAAGCTAAGGTCAAAACATTGATTAAGGAAGAGAATCTACATGAGGGAATGAAGATGGAAGAACACTTGCGAGCAATAGCAAGCTCTAAGATTGCAATTATCGTTTTCTCCAAAACATACACTGAATCTACCTGTTGTCTTCTTGAGCTTGAACAAATCATTGAATGTGTAGCAACTTTTGGTCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCATTGGATGTACGTCATCAGAAGGATGATTTTGGAAAAGCATTGGAAGAAACTGCACGCAAAAGCTATTCAGGAGAACAACTGGAACTTTCATTGTCCAAGTGGAGCCGTGCACTCACCACAGCCGCAGGTATCACTGGTTTGGATCTCAGAAATTTCAGGCATGATGCCGAACTTGTGGAGGCAATTGTTAGCCGCGTTCAAACATTGTTGGACTATTCAGAGTTGCCTATTACCCGATTCCCTGTTGGATTAGAGTCCCACGTGAAAAGGGTGATTAGATGTATCGAAAATCATTCCACCGAAGTCTGTATGATAGGAATATGGGGAATGGGAGGATCGGGTAAAACTACTGTAGCCAAAGCCATCTATAATCGAATTTATCGTACATTCATTGGTAAGAGTTTTATTGAAAATATTAGAGATTGGGATCTAGTAAATAGCAAAAATGTTGATTTGCAAGAAAATCTTCTTTATGAAGTCCTAAAATCAAAGTTCGGGTTCAAAAGCACTTGGATGGGAAGAACTATCATCGAGAACGAACTTTGTCGAAAAAAGGTGCTCATTGTGCTTGATGATGTGAATGAGTTTAGCCAATTAGAAAACCTATGCGGGAGTTGTGAATGGTTCGGTCAAGGATCTGTGATAATCATTACAACTAGAGATGTTCAATTGCTGAACCGACTTAAAGTTAATTATGTTTATGAAATGGATGTTATGAACCAAAATGATTCCCTTGAACTTTTTAGTTGGCATGCCTTTAGAGAAGCAAAACCAAGAAAAGACTTAAATGAACTTGCAAGAAACATAGTTGTTTATTGTGGAGGACTACCACTAGCTCTTAAGGTCCTTGGTTCCTTTTTATATGGTAGGACAATGGAAGAGTGGGAAAATGTACCGTCAAAACTAAAAGTAATTTCCATTGATCAAGTTCAAGAGAAATTGAAAATAAGTTTTGACGATTTACGTGAAATGGAAAAAGATATATTTCTTGATATATGTTGTTTCTTTATTGGTAAAGAGAGAAACTATGTCACAGATGTATTAAATGGCTGTGGACTACATGCTAATATTGGAATAAAAGTTCTCATAGAACGTGGCCTCATAAAAGTTGGAAGGAACAACAAACTTAAAATGCATCCTTTGTTTCGAGACATGGGAAGAGAAATTATTTTTCAGAGATGCCCAAAGGAACCGTGGAAAAGGAGTCGACTATGGTTTCAGGATGATGTAAAAGATGTACTGAAAAATAATACTGGAACAGAAGCTACCCAGGGATTGTCCCTGAAACTACATTCAACCAGCACAGATTGCTTTGAAGCCCATGCCTTCAAGGAAATGAAGAGATTAAGACTTCTACAATTGGATCGTGTACAACTTAATGGAGATTATGGCTACGTTTCTAAACAACTCAGATGGATTTGTTGGCAAGGGTTTCTTTCTAAATACATTCCAAACAACTTTCATATGGAAAATGTAATTGCAATTGATTTAAAACGTAGTCATCTTCAACTCGTCTGGAAACAACCCCAGGTTTTAGAGTGGTTAAAATTCCTTAATCTTAGTCACTCGAAGTTCTTAAGAGAAACACCTGACTTTTCAGGACTACCAAGTCTTGAAAAGCTCATTCTAAAAGATTGCCCAAGTTTGTACAAGGTACACGAATCCATTGGAAATCTCTGCAACCTACTACTGATCAATTTGAAAGACTGCACAAGTCTAATCAGTCTCCCCAGAGAGGTATATAAGTTGAAATCTTTGAGAACTTTCATCCTCTCTGGTTGTTTCAAGATTGACATATTGAAAGAAGATATAGTGAAGATGGAATCCTTGATAACTCTAGTTACTGAAAATACAGCTCTGAAACAAGTGCCCTGTTCAATTTTAAGCTCAAAAAGCATTGCATATATATCCCTATATGGATTTGGAGGATTGTCACATCATATTATTCCTTCTGCTATTCGGTCTTGGATGTTGCCAACAAGGAATCCCCAATCTTTTATTCGTCCGTTTTGCGTGGATAAGGAGAATAATAATTGGGGTGACCTTGCCCCATTGCATAACAGCCTTGCAAATATTCGAAGTGTTTTGGTTCAATTTGACACAGAGTTTCAACTATATAGGCACCTAAAAACAATTCTTTTCGAATGCGGTGCTGATTTTACACAATCAAAAATTTCAAAGGATCAGTTGAGATTTTCTTCGATTGGTATTGGAAGTTACAAGGAGTTCTTCAACACTCTCAGCGATAGCGTTTCTGAGGGATTGACCAACAGTGAGTCTTGTTATGTTTCTCTTCCAAGTGACAACTATCCTTACTGA 2682 0.374 MEFASSSSSSSSSSFLKSESNFIYDAFVNFGGEDIRRKFVSHLHYVILQAKVKTLIKEENLHEGMKMEEHLRAIASSKIAIIVFSKTYTESTCCLLELEQIIECVATFGQIVLPVFYEIDPLDVRHQKDDFGKALEETARKSYSGEQLELSLSKWSRALTTAAGITGLDLRNFRHDAELVEAIVSRVQTLLDYSELPITRFPVGLESHVKRVIRCIENHSTEVCMIGIWGMGGSGKTTVAKAIYNRIYRTFIGKSFIENIRDWDLVNSKNVDLQENLLYEVLKSKFGFKSTWMGRTIIENELCRKKVLIVLDDVNEFSQLENLCGSCEWFGQGSVIIITTRDVQLLNRLKVNYVYEMDVMNQNDSLELFSWHAFREAKPRKDLNELARNIVVYCGGLPLALKVLGSFLYGRTMEEWENVPSKLKVISIDQVQEKLKISFDDLREMEKDIFLDICCFFIGKERNYVTDVLNGCGLHANIGIKVLIERGLIKVGRNNKLKMHPLFRDMGREIIFQRCPKEPWKRSRLWFQDDVKDVLKNNTGTEATQGLSLKLHSTSTDCFEAHAFKEMKRLRLLQLDRVQLNGDYGYVSKQLRWICWQGFLSKYIPNNFHMENVIAIDLKRSHLQLVWKQPQVLEWLKFLNLSHSKFLRETPDFSGLPSLEKLILKDCPSLYKVHESIGNLCNLLLINLKDCTSLISLPREVYKLKSLRTFILSGCFKIDILKEDIVKMESLITLVTENTALKQVPCSILSSKSIAYISLYGFGGLSHHIIPSAIRSWMLPTRNPQSFIRPFCVDKENNNWGDLAPLHNSLANIRSVLVQFDTEFQLYRHLKTILFECGADFTQSKISKDQLRFSSIGIGSYKEFFNTLSDSVSEGLTNSESCYVSLPSDNYPY 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01193 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 453 IPR027417 -
Viun8g01193 893 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 737 IPR044974 GO:0006952
Viun8g01193 893 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 193 - -
Viun8g01193 893 Pfam TIR domain 24 187 IPR000157 GO:0007165
Viun8g01193 893 Pfam NB-ARC domain 206 440 IPR002182 GO:0043531
Viun8g01193 893 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Viun8g01193 893 Gene3D - 17 189 IPR035897 -
Viun8g01193 893 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 167 IPR035897 -
Viun8g01193 893 PRINTS Disease resistance protein signature 654 670 - -
Viun8g01193 893 PRINTS Disease resistance protein signature 394 408 - -
Viun8g01193 893 PRINTS Disease resistance protein signature 225 240 - -
Viun8g01193 893 PRINTS Disease resistance protein signature 301 315 - -
Viun8g01193 893 Gene3D - 190 354 IPR027417 -
Viun8g01193 893 Gene3D - 359 443 IPR042197 -
Viun8g01193 893 SUPERFAMILY L domain-like 512 772 - -
Viun8g01193 893 Coils Coil 428 448 - -
Viun8g01193 893 Gene3D Ribonuclease Inhibitor 512 800 IPR032675 -
Viun8g01193 893 SMART till_3 23 165 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01193 Viun-Chr8 16734003 16738036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01193 24 748 WRKY Transcription Factor Family AT4G12020 28.016 5.88e-70 251