Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01173 ATGCCCTGGGAACTGTGGCTCGTGCCCTTGGAGGAAGATGTTCTCTCTTTCGATTTCATTGTTCTCCTTAAAATCAGACTTGGACCTAATGGACAAGAGTTTTTTACTTCTTATGACGAAGTTTGTGAAAGCTTCGATGCTATGAGATTGCAGGAGAACATTTTAAGGGGTATTTATGCATATGGTTTTGAGAAACCTTCTGCCATTCAACAAAGGGGAATTGTTCCTTTCTGCAAGGTGCTTGATGTAATCCAGCAAGCACAATCTGGAATCGGAAAAACTGCTACATTTTGCTTTGGAGTTTTGCAGCAGCTTGATTACAACATAGTTCAGTGCCAGGTAAACATGTTGTAA 354 0.4068 MPWELWLVPLEEDVLSFDFIVLLKIRLGPNGQEFFTSYDEVCESFDAMRLQENILRGIYAYGFEKPSAIQQRGIVPFCKVLDVIQQAQSGIGKTATFCFGVLQQLDYNIVQCQVNML 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01173 117 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 43 71 IPR014014 GO:0003724
Viun8g01173 117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 113 IPR027417 -
Viun8g01173 117 Gene3D - 33 117 IPR027417 -
Viun8g01173 117 PANTHER RNA HELICASE 39 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01173 Viun-Chr8 16302086 16304800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01173 33 117 Eukaryotic Initiation Factors Gene Family AT3G13920 83.529 2.67e-45 149