Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01163 ATGAGAGTTAACTCGGCACAGAATGATAATTCTGGGAAGGAGAGCAGCTCGACCTCGCCGTTATCACCGTCGGAGGCGGCGGCGCTGTCAGAGTTCAAACCGGAGAAGCGCAACCGGGACTCGAACAAGCACCCGGTGTACCGAGGGGTGCGCATGCGGAACTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAATCGAGAATATGGCTGGGGACATTCCCGACGCCGGAAATGGCGGCGAGGGCGCATGACGTGGCAGCGCTGAGCATAAAGGGGAACAGCGCCATCCTCAACTTCCCCGAACTCGCCACCTCGCTTCCGCGTCCCGTGTCGTTGGCCCCTCGCGACGTGCAAGCCGCAGCGGCCAAAGCGGCTCACATGGACTTCCCTCCTTCGTCCACGTCGTTATCATCATCGACATCATCGTTGGTGTCAACAACTTCCTCCTCCTCGTCTTTATCCTCGTTGGTTTCAACCGCGGACTTGTCCGCTGAGTCGGAGGAACTGAGCCAAATCATCGAGTTGCCGAGGTTGGAAACGAGTTACGAGTTGGGAAAGGAGTTTGTGTTCGCGGACTCGCAGGACACGTGGATGTATCAGTCACCGATACCTTGGTTGCAAACCACGTACGATGCTTCTCATGCCGACGATGATATTGCAGTGGCAGAGACTGGGCTTGTCACTAGTTTTAAGAGTTTTCTGTGGGATTACTGA 723 0.5643 MRVNSAQNDNSGKESSSTSPLSPSEAAALSEFKPEKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELATSLPRPVSLAPRDVQAAAAKAAHMDFPPSSTSLSSSTSSLVSTTSSSSSLSSLVSTADLSAESEELSQIIELPRLETSYELGKEFVFADSQDTWMYQSPIPWLQTTYDASHADDDIAVAETGLVTSFKSFLWDY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01163 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 188 - -
Viun8g01163 240 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Viun8g01163 240 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Viun8g01163 240 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Viun8g01163 240 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Viun8g01163 240 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Viun8g01163 240 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Viun8g01163 240 MobiDBLite consensus disorder prediction 1 44 - -
Viun8g01163 240 MobiDBLite consensus disorder prediction 1 25 - -
Viun8g01163 240 MobiDBLite consensus disorder prediction 30 44 - -
Viun8g01163 240 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Viun8g01163 240 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Viun8g01163 240 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01163 Viun-Chr8 15993768 15995566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01163 33 214 AP2-EREBP Transcription Factor Family AT5G11590 66.489 6.87e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun8g01163 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01163 K09286 - gmx:100305349 320.472