Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01152 ATGATCTCAATTTTCATGAACATGCCTTTCAAGAACCATTCACCAGTGTTCATCATCATGGTTCTTTCTTTCATTTCTAATGTTCAAGCACAAAACGATGACACAGATACCGTGCAAGATTTTCCTGAACCTGTTCATCCAAGCAAGATGGTTGTAGTAGTGGCCCTTTCAATATTGTTCACTATATCATTTCTCTTACTTGTCTATATAAGGTTCCGCAGAAGCATCCCTCTTGAGCTTACCAGAAGGAGCCATGATTCACCAGATTTTCAAGCACAAGCACGGTCAAGATCAAGAAGTTCAGGGATTGACAGAAAAGTGATTGAAGCACTTCCATTTTTCATGTTCTCTTCCCTCAAAGGGTCCAAACAAGGGCTAGAGTGCACAGTGTGCTTGTCACAGTTTGAGGACACAGAGATTCTTAGGCTCTTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCTACATGCCCTCTTTGCAGGAATAATATTGACCCCTTAGACATCAAGAACTTCACCTACTCAATCAGTTCAAGGTCCCTGAGAGTTCCTTCAAATTTAACAGAGGACACTAACGTTGAAATCTTTGTTCACAGGGAACCTTCTTCCCATCAAGGCTCATCATCATCATCATCAAGGTTTAACATTGGAAACAGGTTTTGGAATTTGGGTTGGAGCAACAAAAAGAAGCTTCTCGTTGACCAAGAGGTTTGTGGCACAAATGGGACACCCGTGCATAAGTTCTATCACAAAATTGTTGTCTCTGATGCTGTTAGAAGAAGCAGGTGGAGTGATCTTAACTCTTCGGACATGTTATCTTTGAAGAGTGAGATGATTCATCACGCTTCAATCGGAAGATTCTCTCCCTCGAATGAGTTTTTTTGTGGAAATTCGAGCCTTTCCTCTGTTTTCAATGAGGATGAAAGTTCAATTACGTTATTGAACACAGCTGAGAAGAGATCAATGTCTGATATTGCTCATGTTCCAAGGTTCAAAGAAATATGCAAGCAGAATAGCATGGAAGCAGGTGAGGCATCAAGTGGGAATAACGAGAGGGAAGAGAGGATGAGGAGGATTTGGTTGGCAATTGCTCAACGAACAGTGCAATGGTTTGCAGGACAAGAAAGAAATTCAACAGATTTAGAGATAAAACATTTAGCATCGGATGTTTGA 1200 0.41 MISIFMNMPFKNHSPVFIIMVLSFISNVQAQNDDTDTVQDFPEPVHPSKMVVVVALSILFTISFLLLVYIRFRRSIPLELTRRSHDSPDFQAQARSRSRSSGIDRKVIEALPFFMFSSLKGSKQGLECTVCLSQFEDTEILRLLPKCKHAFHMNCIDKWFESHSTCPLCRNNIDPLDIKNFTYSISSRSLRVPSNLTEDTNVEIFVHREPSSHQGSSSSSSRFNIGNRFWNLGWSNKKKLLVDQEVCGTNGTPVHKFYHKIVVSDAVRRSRWSDLNSSDMLSLKSEMIHHASIGRFSPSNEFFCGNSSLSSVFNEDESSITLLNTAEKRSMSDIAHVPRFKEICKQNSMEAGEASSGNNEREERMRRIWLAIAQRTVQWFAGQERNSTDLEIKHLASDV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01152 399 SMART ring_2 128 169 IPR001841 -
Viun8g01152 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 177 IPR013083 -
Viun8g01152 399 CDD RING-H2_EL5-like 127 170 - -
Viun8g01152 399 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Viun8g01152 399 SUPERFAMILY RING/U-box 109 176 - -
Viun8g01152 399 Pfam Ring finger domain 127 170 IPR001841 -
Viun8g01152 399 FunFam RING-H2 finger protein ATL43 103 177 - -
Viun8g01152 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01152 Viun-Chr8 15636436 15637873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01152 47 390 C3H Transcription Factor Family AT2G20030 42.033 8.58e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01152 K10664 - gmx:100803881 558.14