Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01098 ATGTCAAAGTCTCCCTCTAATGAACAGCGACAGTCCATCTATTCTGCCTCTCTTCCTGGGGAATTTAATGAGGCAATGGGAATGGATGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAATTTGTCATCACCGGTTGAGAAAGAAACTATTACAGCACGCTTACTAGGTATTGCTCGGAGAAGAAAGGATGCTAGAACACTCATAGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACATCTCTAGCAAAAGTTAATGTTGCTTCCACTCTAAGTGTCCTGTGCAAAGATGAAGAACTGAGGTTAAAAGTACTACTTGGTGGTTGTATCCCACCATTATTGTCACTTTTAAACTATGAATCCACCGAGACCAGGAAGGCAGCCGCTGAAGCAATATATGAAGTTTCCTCAGGTGGTCTGTCTGATGATCATGTTGGTATGAAAATTTTTGTCACAGAGGGTGTAGTTCCAACCTTATGGAGTCAACTAAATCCAAAGAACAAAGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATAGTGGGGCTCTTGTCTTCAGACAATTCTGTTTCTCAGTCAAATGCAGCTTCTTTATTGGCACGTTTAATGCTGGCTTTCAGTGATAGTATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAGCTTGTTGGTCCAAAAAATGACATTTCTGTTAGGGCTAGTGCAGCTGATGCCCTAGAAGCTCTCTCTTCAAAATCTACTATGGCTAAACAGGTCATTGTTAATGCAGATGGAATTCCAATCCTTATTGGAGCAATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTACAAGAGCACGCAACTCGAGCTTTAGCCAATATCTGTGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAACTTTCACGTTCTCCCCACCTTGATGCTCCAGTTAGTGATATAATTGGGGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAAGTAGGTGTCGATGAGAAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACCCTTTTAAAGCCTCGGGACAGCAAACTGATTCAAGAGCGTGTTCTTGAGGCTATGGCTAGCCTTTATGGAAACATCTGTCTCTCAAAGTGGCTCATTCAAGCAGATTCAAAGAAGGTTCTTATTGGACTTATAACCATGGCTGCCACTGATGTACAAGAGTATCTGATACTTTCGTTGACAACCTTGTGTAGTGATAAGATTGGAGTATGGGAGGCCATAAAAAAGAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGCTGCTAGCAATCCTAACTGATCAGGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCTCCATTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGAAGCAGCAAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATCCGCGCTTGTGTTGAAAGTGCTGGAGCGATACCAGCATTTTTATGGCTTCTTAAGAGTGGTGGACCAAAAGGGCAGGAAGCTTCTGCTATGGCACTCACAAAGCTTGTTCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTGGGGGATTCTCCAAGCTCGAAAGCCCACATAATCCGAGTTTTAGGTCATGTTCTTACTATGGCTTCACAGAATGATCTCCTTGAAAAAGGTTCTGCAGCTAACAAGGGCTTGAGATCTCTAGTTCAGGTCCTCAATTCACCGAATGAGGAAACCCAAGAATATGCAGCTTCAGTTCTAGCTGATTTGTTTATCACAAGACAAGACATCTGTGATAGTCTTGCAACTGATGAGATTGTGCTTCCTTGCATGAAGCTTTTGACTAGTAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGCGTTAAGTGTTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAAATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCGTTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTGGCTGAAGATGTTGTTTCAGCTTTAACTAGAGTTCTGGCAGAAGGATCCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTACTGAAGCATTTTCCTGTAGGTGATGTTCTCAAGGGGAGTGCTCAATGTCGTTTCACTGTGCTTGCACTTGTTGATTCGTTAAAAGCTATGGATATGGACGGAACTGATGCTGCTGATGCTTTAGAAGTAATTGCATTGCTAGCCAGGACCAAAAAAGGTGTGAGCAACAATTACTCTGCATGGTCAGCTCTGGCTGAAATACCGTCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCCTCCCTTGTGCAGGACAAGGCAATTAAAATTCTATCTAGACTTTGTGGGGATCAGCCTGCCGTTCTTGGTGATTTGTTATCTACTAGTTCCAGATCCATTGGTTCATTGGCTAATAGAATAATGAACTCCTCCAGTCTAGAAGTAAAAATTGGAGGGTCTGCCTTGCTAATTTGTGCTGCTAAGGAGAAGAAAGAGCTTTCAATGGATTCACTTGACGTTTCAGGGCATCTGAAACCATTAATATATTCTTTAGTTGAAATGATAAAGCAAAGTTTTAGGTATTCTTCATTAGAAATTGAAGTTCTCGCTTCTAAAGGTTTTATGGAGAGAAATGGTTTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCTGCCACTGCCTTGGGAAGCACTATTGCGATGTGGTTGCTTTCAGTTATTGCTTCTTTCCATATAAAGAGCAAGCTCACAATTATGGAAGCTGGTGGACTTGAAGTTCTCTCAGACAAACTTGGAAGATATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAATGCCTTGCTGTTGTCCATTTTATTTCAGGATGAAAATGTTGTTCAATCTCCTGTGACAATGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCCAGTCTTGTTTGTAATGGCAATATGGGAATAGATCTTGCCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATAATTGGGCATGTAGAGTCAGATATGCCAAATCTCATGGATTTATCAGAAGAATTTTCATTGGTACAAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTAAAAGTGGGTTCTACTGCCAGGAAATCTATACCACTCTTAGTGGATCTCCTGAGACCAATACCAGAAAGGCCTACTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATAGCAATAAATTAATCCTTGCTGAAGCTGGAGCTCTTGAAGCTTTGAATAAATACCTGTCCTTGAGTCCTCAAGACTCAACTGAGGCTGCTATATCTGAGTTATTGAGAATATTATTTTGCAATTCTGATCTCATTAAACACGAAGCAGCAATCAGTTCATTGAACCAACTTATAGCTGTTTTGCGTCTTGGATCAAGAACTGCTAGATACAGTGCAGCAAGAGCACTTCATGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAAACAAGCTATTCAACCATTGGTTGATATGCTTAACACGACGTCAGGTCATGAACAGGAGGCTGCTCTCATGTCCTTGATCAAGTTAACTTCGGGAAATTCTTCAAAAGTATCTCTTCTTACTGATATGGAAGGAAACCCACTTAAATGTTTATACAAAATACTGTCTTCTGCTTCATCCTTGGAACTGAAGAGCCATGCTGCCCAACTCTGCTTTGCTCTTTTTGCCAATAGCAAGATCAGAGCAGACCCAGTTGCCTCAGAATGCATAGAACCCCTTATATTACTATTGCAGTCTGGTTCTGAGACAGCAATAGAGTCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGGTAGAGCTTGCAGCGGCCTACAATATTGTGGATCTCCTTGTGAGCTTGGTTTCTGGTACTAACTATCAACTTATTGAGGCTACTGTATCTGCTCTTATCAAATTGGGCAAAGATAGGACTCCAAGTAAACTGGACATGGTGAAAGCTGGCATTGTTGATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCTTTGTGTTCCACAATATCTGAGCTCTTTCGCATTCTAACTAATAGTAGTGCAATTGCAAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTATGGGGACAGCATAGTGCGTTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCCACCTTGAAGCTTACTCCAAGTCAAGTTATTGAACCCTTAATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACTAAGAATGCAGTTGTGCCCCTCGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCTATAAAAGCATTGGAAAAAATTTCCACTAGTTGGCCAAAGGCTGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCACATGCCCTCTGGGAATCAGCTGCTTTAGTTCTTTCTAATGTATTACATTCCAATGCCGATTACTACTTTAAAGTTCCTGTAGTAGTTCTCGTAAAACTTTTGCACTCGACACTTGAGAGTACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGATAGAAGTGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTTATAGAGGCTCTGTTAGACCTGTTAAGATCTCATCATTGTGAAGAAGCATCTGGCAATTTATTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTGTCTAAGTATGCTATAGCACCTTTGTCCCAGTATCTCTTGGATCCACAAACCAGATCACAGTCTGGTAAGCTTCTTGCTGCTTTAGCTTTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGATCTAGTGCCTCTGTTTCTGCATGTCGGGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTAGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACAAATAGACGAGCTGTCGCAGAAGCTGGGGGCATACTGGTGATTCAAGAATTGCTGCTGTCTCCAAACACAGAAGTTGCTGCGCAAGCTGCTTTACTGATCAAATTTTTGTTTTCTACACATACACTGCAAGAATATGTATCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAAGCTGTTCTGAAAACTTTGCATGTGATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGTGCACTTAAATCTGGTGGTGAAGCGGCTCAGGACTCTGTACTTGATACGTTTTGCTTGCTAAGACAGTCATGGTCAACTATGCCAATAGATATAGCAAAGTCCCAAGCTATGATTGCTGCTGAAGCCATCCCCATTTTGCAAATGCTCATGAAAACCTGCCCACCTAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGGTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAGGCAAACTATGGGAAGCACTAACGCATTCTGCCGGTTAACACTAGGAAATGGTCCTCCAAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCCGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTTCCTCCAAAGGGCCAAAAGCTACATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACACTTGGAAGAGTCACCATTCAAATTGATAAAGTTGTATCAGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGTAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATCTCCAATGATGATATTTGA 6408 0.4143 MSKSPSNEQRQSIYSASLPGEFNEAMGMDDPESTMATVANFVEQLHANLSSPVEKETITARLLGIARRRKDARTLIGSHAQAMPLFINILRNGTSLAKVNVASTLSVLCKDEELRLKVLLGGCIPPLLSLLNYESTETRKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWSQLNPKNKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNSVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGPKNDISVRASAADALEALSSKSTMAKQVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHATRALANICGGMSALILYLGELSRSPHLDAPVSDIIGALAYTLMVFEEKVGVDEKHFDATQIEDILVTLLKPRDSKLIQERVLEAMASLYGNICLSKWLIQADSKKVLIGLITMAATDVQEYLILSLTTLCSDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSPNEETQEYAASVLADLFITRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSVLSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGSLEGKQNASRALHQLLKHFPVGDVLKGSAQCRFTVLALVDSLKAMDMDGTDAADALEVIALLARTKKGVSNNYSAWSALAEIPSSLELLVCCLAEGPSLVQDKAIKILSRLCGDQPAVLGDLLSTSSRSIGSLANRIMNSSSLEVKIGGSALLICAAKEKKELSMDSLDVSGHLKPLIYSLVEMIKQSFRYSSLEIEVLASKGFMERNGFQEVDEFDIPDPATALGSTIAMWLLSVIASFHIKSKLTIMEAGGLEVLSDKLGRYTSNPQAEYEDTEGIWINALLLSILFQDENVVQSPVTMRIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNMGIDLAIANSGAVAGLITIIGHVESDMPNLMDLSEEFSLVQNPDQVVLDHLFEIEDVKVGSTARKSIPLLVDLLRPIPERPTAPPVAVRLLISIADGSDSNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSDLIKHEAAISSLNQLIAVLRLGSRTARYSAARALHELFDADNIRDSELAKQAIQPLVDMLNTTSGHEQEAALMSLIKLTSGNSSKVSLLTDMEGNPLKCLYKILSSASSLELKSHAAQLCFALFANSKIRADPVASECIEPLILLLQSGSETAIESGVCAFERLLEDEQQVELAAAYNIVDLLVSLVSGTNYQLIEATVSALIKLGKDRTPSKLDMVKAGIVDNCLKLLQLAPSSLCSTISELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRSDASSAEQMMEAGVIEALLDLLRSHHCEEASGNLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEAVLKTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLRQTMGSTNAFCRLTLGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDI 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01098 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Viun8g01098 2135 SUPERFAMILY ARM repeat 269 460 IPR016024 -
Viun8g01098 2135 Gene3D - 1000 1342 IPR011989 -
Viun8g01098 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 459 500 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 665 705 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Viun8g01098 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Viun8g01098 2135 CDD C2 2009 2099 - -
Viun8g01098 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 12 2129 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Viun8g01098 2135 Gene3D - 1343 1526 IPR011989 -
Viun8g01098 2135 Gene3D - 370 626 IPR011989 -
Viun8g01098 2135 SUPERFAMILY ARM repeat 72 311 IPR016024 -
Viun8g01098 2135 SUPERFAMILY ARM repeat 1613 2005 IPR016024 -
Viun8g01098 2135 SUPERFAMILY ARM repeat 470 1125 IPR016024 -
Viun8g01098 2135 Gene3D - 627 831 IPR011989 -
Viun8g01098 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Viun8g01098 2135 Gene3D - 155 355 IPR011989 -
Viun8g01098 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Viun8g01098 2135 SMART C2_3c 2008 2104 IPR000008 -
Viun8g01098 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Viun8g01098 2135 Gene3D - 23 154 IPR011989 -
Viun8g01098 2135 Gene3D C2 domain 2007 2133 IPR035892 -
Viun8g01098 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Viun8g01098 2135 Pfam C2 domain 2008 2107 IPR000008 -
Viun8g01098 2135 SUPERFAMILY ARM repeat 1188 1544 IPR016024 -
Viun8g01098 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 661 IPR000225 GO:0005515
Viun8g01098 2135 Gene3D - 1528 1796 IPR011989 -
Viun8g01098 2135 Gene3D - 1797 2003 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01098 Viun-Chr8 13608467 13619340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01098 432 700 U-box Gene Family AT2G23140 27.599 2.00e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01098 - - gmx:100796864 3811.15