Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01087 ATGGATCAACGTGAAGAAGGCAAACAGCAACCATCCCAGAAAACACCATCACACAATAATCAGCTTGACCCAGTTGAAAGTTCTGACAATGTTGCTCCAGAAAATGTTTTGCAGGAGCAAAGTGGCACATTCACAACGTTTGCATCATTAGAAAGTGGAAGTGAGAGTGATTCCTCTTTCGATGAACATGATGAGGATTCTGAGTTTTTTCTGAGCCAGGAGTTTGAATCTGAACTTCAGTTTCTTGAGAGTGAAGGGAGCAATGATGATGATGATGATGATGATGATGATGAGGAAATGGAGGAAGATGAGATCGATGTGGATGAGTTGACCTACGAGGAGTTGATTGAGTTGGGAGATTTTATAGGGCGAGAGAAGAGAGGATTATCAGGAAGTGAAATTTGTTCATGCTTGCATTCATACACTTTTCATTCTGCAGAAAGCAAAAGTGGAGTTGATCTTTGTGTGATTTGCCAGGTTGAATATGAAGAAGGTGAAGCCTTGGTAGCAATTCAGTGTGAGCACCCTTATCATACAGATTGCATAACCAAGTGGCTTCAGATTAAGAAGGTTTGCCCTATATGTAACACTGAAATTTCTGCTCCCAAGATAGTTAGTTAA 621 0.4058 MDQREEGKQQPSQKTPSHNNQLDPVESSDNVAPENVLQEQSGTFTTFASLESGSESDSSFDEHDEDSEFFLSQEFESELQFLESEGSNDDDDDDDDDEEMEEDEIDVDELTYEELIELGDFIGREKRGLSGSEICSCLHSYTFHSAESKSGVDLCVICQVEYEEGEALVAIQCEHPYHTDCITKWLQIKKVCPICNTEISAPKIVS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01087 206 SMART ring_2 155 195 IPR001841 -
Viun8g01087 206 MobiDBLite consensus disorder prediction 12 55 - -
Viun8g01087 206 MobiDBLite consensus disorder prediction 83 108 - -
Viun8g01087 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
Viun8g01087 206 SUPERFAMILY RING/U-box 116 202 - -
Viun8g01087 206 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 26 200 IPR033276 GO:0004842|GO:0016567|GO:0046621
Viun8g01087 206 MobiDBLite consensus disorder prediction 1 108 - -
Viun8g01087 206 FunFam E3 ubiquitin ligase BIG BROTHER-related 121 202 - -
Viun8g01087 206 MobiDBLite consensus disorder prediction 58 72 - -
Viun8g01087 206 Pfam Ring finger domain 154 196 IPR001841 -
Viun8g01087 206 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01087 Viun-Chr8 13390897 13391787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01087 90 199 C3H Transcription Factor Family AT3G63530 46.018 1.03e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01087 K19045 - gmx:100780686 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01087 8 13390897 13391787 Viun8g01087 8 13390897 13391787 ECH
Viun9g02382 9 33317449 33318310 Viun8g01087 8 13390897 13391787 PCT