Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01072 ATGAAAAATCGTTTCTCACCGAATACGTGCGCACACGAAATGTCGACGCAGAATCGTCGCTCGTCGTTTTCTTCCTCAACGGCGTCGTCTTTGGCCAAACGACATTCCTCCGTCGTGCCGTCGGGGAAGGCTGCGAAGAGAGCGCCGCTCGCCAACATCACAAACCAGAGGAATGCGCCTTCCTCATCTTCGGTGTCAAGTTCAATTAAAACTGCCAAGACCAAGAAAGAAGATCCCGCAAGAAGCAGTAGCATCACAAGATCAACAGCTTGTGGGAACAAAATACGTGAGTTAAAGACTATTAACTCAGCCACAACTATCATTCCAAAGGCTAATTCCTTACCACAAAGGAAGGATGCTGCTCCTGCAGTTGCCAGAGTCTCTATGCCGGTTAGGAGCAGCATTGATGTTTCTCCTGGTAAATCAGATGCGAGGTCCGTTTCTATGGATGAAACGTTGTCTTCTAATTCTATCAAGAGTCCTGATGAAGTTGAATATCTGGACAACAGGGATGTCTCAGCTGTTGATTCAATTCAGAGAAAGACAAGCAATTTGAGCGTTTGTGGTACCACCAAGCCAGAAGGTAACATATATAGTGGGGAAATAGTTGTTGATTTGAAAAGAGAGGACAAGGTTGTCAATATTGATAACATTTGCTCGGATCCGCAGCTTTGTGCAACCTATGCTTGTGATATCTACAAGCACCTACGTGAATCTGAGGAAAATAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAATGACATAAATGTTAGCATGCGTGCAATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGCCTTGTACCTGATACATTGTATTTGACGGTGAACTACGTTGATCGGTATCTTTCAGGGAATGCCATGAATAGAAAAAGATTACAATTACTTGGTGTTTCCTGCATGATGATTGCCTCTAAATACGAGGAGATTTGTGCACCACAGGTAGAGGAATTTTGTTATATAACTGATAATACGTACATAAAAGAAGAGCTTTTACGAATGGAATCTGCTGTTTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCAGCTCATGATGTCAAAGAGCTACCTTCACTTCAACTGGAGTGCCTAACCAACTTTATTGCCGAATTGTCTCTCTTGGAGTACAGCATGCTGTGTTATCCTCCATCACTGATAGCTGCTTCAGCAACTTTCCTTGGCAGATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCATATTGCAGCATTACACACAATACCGGCCTTCTGATTTGTGTGCTTGTGTGAATGATCTCCATCGCCTTTGTTGCAGTACCGATACTTCTAATTTACATGCCATCCGAGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAGTGCGTCCCTGTTTCAATTCCGCAAGAAGTTTTCCAGAATTGA 1485 0.4283 MKNRFSPNTCAHEMSTQNRRSSFSSSTASSLAKRHSSVVPSGKAAKRAPLANITNQRNAPSSSSVSSSIKTAKTKKEDPARSSSITRSTACGNKIRELKTINSATTIIPKANSLPQRKDAAPAVARVSMPVRSSIDVSPGKSDARSVSMDETLSSNSIKSPDEVEYLDNRDVSAVDSIQRKTSNLSVCGTTKPEGNIYSGEIVVDLKREDKVVNIDNICSDPQLCATYACDIYKHLRESEENKRPSTDFMERIQNDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYVDRYLSGNAMNRKRLQLLGVSCMMIASKYEEICAPQVEEFCYITDNTYIKEELLRMESAVLNYLKFEMTAPTVKCFLRRFVRAAAHDVKELPSLQLECLTNFIAELSLLEYSMLCYPPSLIAASATFLGRFILFPSKKPWNSILQHYTQYRPSDLCACVNDLHRLCCSTDTSNLHAIREKYSQHKYKYVAKKCVPVSIPQEVFQN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01072 494 MobiDBLite consensus disorder prediction 139 156 - -
Viun8g01072 494 SUPERFAMILY Cyclin-like 220 357 IPR036915 -
Viun8g01072 494 MobiDBLite consensus disorder prediction 1 91 - -
Viun8g01072 494 MobiDBLite consensus disorder prediction 134 156 - -
Viun8g01072 494 SMART cyclin_7 267 351 IPR013763 -
Viun8g01072 494 SMART cyclin_7 364 453 IPR013763 -
Viun8g01072 494 ProSitePatterns Cyclins signature. 262 293 IPR006671 -
Viun8g01072 494 Pfam Cyclin, C-terminal domain 360 481 IPR004367 -
Viun8g01072 494 Pfam Cyclin, N-terminal domain 231 357 IPR006671 -
Viun8g01072 494 SUPERFAMILY Cyclin-like 360 483 IPR036915 -
Viun8g01072 494 MobiDBLite consensus disorder prediction 1 36 - -
Viun8g01072 494 PIRSF Cyclin_A_B_D_E 8 491 IPR046965 GO:0016538|GO:0044772
Viun8g01072 494 Gene3D - 245 358 - -
Viun8g01072 494 MobiDBLite consensus disorder prediction 51 70 - -
Viun8g01072 494 SMART Cyclin_C_2 360 484 IPR004367 -
Viun8g01072 494 PANTHER CYCLINS 156 476 IPR039361 -
Viun8g01072 494 FunFam Cyclin A1 347 480 - -
Viun8g01072 494 Gene3D - 231 480 - -
Viun8g01072 494 FunFam Mitotic cyclin 6 245 345 - -
Viun8g01072 494 CDD CYCLIN_AtCycA-like_rpt2 360 475 - -
Viun8g01072 494 CDD CYCLIN_AtCycA_like_rpt1 221 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01072 Viun-Chr8 12997602 13001559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01072 17 494 Core Cell Cycle Gene Families AT1G44110 57.347 1.66e-179 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01072 K06627 - gmx:100776207 722.62