Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01071 ATGAAAAATCGTTTCTCACCGAATACGTGCGCACACGAAATGTCGACGCAGAATCGTCGCTCGTCGTTTTCTTCCTCAACGGCGTCGTCTTTGGCCAAACGACATTCCTCCGTCGTGCCGTCGGGGAAGGCTGCGAAGAGAGCGCCGCTCGCCAACATCACAAACCAGAGGAATGCGCCTTCCTCATCTTCGGTGTCAAGTTCAATTAAAACTGCCAAGACCAAGAAAGAAGATCCCGCAAGAAGCAGTAGCATCACAAGATCAACAGCTTGTGGGAACAAAATACGTGAGTTAAAGACTATTAACTCAGCCACAACTATCATTCCAAAGGCTAATTCCTTACCACAAAGGAAGGATGCTGCTCCTGCAGTTGCCAGAGTCTCTATGCCGGTTAGGAGCAGCATTGATGTTTCTCCTGGTAAATCAGATGCGAGGGATGTCTCAGCTGTTGATTCAATTCAGAGAAAGACAAGCAATTTGAGCGTTTGTGGTACCACCAAGCCAGAAGGTAACATATATAGTGGGGAAATAGTTGTTGATTTGAAAAGAGAGGACAAGGTTGTCAATATTGATAACATTTGCTCGGATCCGCAGCTTTGTGCAACCTATGCTTGTGATATCTACAAGCACCTACGTGAATCTGAGGAAAATAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAATGACATAAATGTTAGCATGCGTGCAATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGCCTTGTACCTGATACATTGTATTTGACGGTGAACTACGTTGATCGGTATCTTTCAGGGAATGCCATGAATAGAAAAAGATTACAATTACTTGGTGTTTCCTGCATGATGATTGCCTCTAAATACGAGGAGATTTGTGCACCACAGGTAGAGGAATTTTGTTATATAACTGATAATACGTACATAAAAGAAGAGCTTTTACGAATGGAATCTGCTGTTTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCAGCTCATGATGTCAAAGAGCTACCTTCACTTCAACTGGAGTGCCTAACCAACTTTATTGCCGAATTGTCTCTCTTGGAGTACAGCATGCTGTGTTATCCTCCATCACTGATAGCTGCTTCAGCAACTTTCCTTGGCAGATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCATATTGCAGCATTACACACAATACCGGCCTTCTGATTTGTGTGCTTGTGTGAATGATCTCCATCGCCTTTGTTGCAGTACCGATACTTCTAATTTACATGCCATCCGAGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAGTGCGTCCCTGTTTCAATTCCGCAAGAAGTTTTCCAGAATTGA 1410 0.4305 MKNRFSPNTCAHEMSTQNRRSSFSSSTASSLAKRHSSVVPSGKAAKRAPLANITNQRNAPSSSSVSSSIKTAKTKKEDPARSSSITRSTACGNKIRELKTINSATTIIPKANSLPQRKDAAPAVARVSMPVRSSIDVSPGKSDARDVSAVDSIQRKTSNLSVCGTTKPEGNIYSGEIVVDLKREDKVVNIDNICSDPQLCATYACDIYKHLRESEENKRPSTDFMERIQNDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYVDRYLSGNAMNRKRLQLLGVSCMMIASKYEEICAPQVEEFCYITDNTYIKEELLRMESAVLNYLKFEMTAPTVKCFLRRFVRAAAHDVKELPSLQLECLTNFIAELSLLEYSMLCYPPSLIAASATFLGRFILFPSKKPWNSILQHYTQYRPSDLCACVNDLHRLCCSTDTSNLHAIREKYSQHKYKYVAKKCVPVSIPQEVFQN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01071 469 Pfam Cyclin, C-terminal domain 335 456 IPR004367 -
Viun8g01071 469 SUPERFAMILY Cyclin-like 335 458 IPR036915 -
Viun8g01071 469 CDD CYCLIN_AtCycA_like_rpt1 196 331 - -
Viun8g01071 469 MobiDBLite consensus disorder prediction 1 91 - -
Viun8g01071 469 SMART cyclin_7 242 326 IPR013763 -
Viun8g01071 469 SMART cyclin_7 339 428 IPR013763 -
Viun8g01071 469 PANTHER CYCLINS 119 451 IPR039361 -
Viun8g01071 469 Gene3D - 206 455 - -
Viun8g01071 469 SMART Cyclin_C_2 335 459 IPR004367 -
Viun8g01071 469 PIRSF Cyclin_A_B_D_E 8 466 IPR046965 GO:0016538|GO:0044772
Viun8g01071 469 Gene3D - 220 333 - -
Viun8g01071 469 MobiDBLite consensus disorder prediction 1 36 - -
Viun8g01071 469 CDD CYCLIN_AtCycA-like_rpt2 335 450 - -
Viun8g01071 469 FunFam Mitotic cyclin 6 220 320 - -
Viun8g01071 469 ProSitePatterns Cyclins signature. 237 268 IPR006671 -
Viun8g01071 469 MobiDBLite consensus disorder prediction 51 70 - -
Viun8g01071 469 FunFam Cyclin A1 322 455 - -
Viun8g01071 469 Pfam Cyclin, N-terminal domain 206 332 IPR006671 -
Viun8g01071 469 SUPERFAMILY Cyclin-like 195 332 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01071 Viun-Chr8 12997602 13001559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01071 17 469 Core Cell Cycle Gene Families AT1G44110 58.140 4.18e-170 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01071 K06627 - gmx:100776207 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01071 8 12997602 13001559 Viun8g01071 8 12997602 13001559 ECH
Viun8g01071 8 12997602 13001559 Viun9g03414 9 40473280 40475595 PCT