Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01066 ATGGGTCCAAAACGAAAGGAGTGTTTGTTCTCCACCACAAACTCAAAAATGGATAAGCAATGGATTCTATTCCTTCTTCATTTGATGCCCCTCTTCGCCGTGTTCACACATGGAGCTGCATCTTCCACATGCCCCATGGATCTCTCCTATGTTGGTTCCATTCCCTGGGACACTTCAATCTGCAGAGAAGACCCTATCGACAAGAAACACTGTTGCGACACACTAAGGAGTGTCTTTGCCATTGGCCTCGCTGAGCGCCTCAAAGATCATCACATATTTTACCTTCCTGATCCAAACACTTCCTCCGCTTGCTTACATGACTTCACACGCAGGCTTTCAGCCTTGTCCATCCCCCAAAACATGGTTCCTTTTTGCTTCCCCAACCCATCACGCTTTGTTTTCAACTCTTCGGCTTGTTTGGGTATCAGAACCGTGGAAGATTGGAACTTTACGGTTGGCGACGATACCCCTTTGAACTCAACTTGCAATGGGGACCTCAAAGACAAAACACGCTGCAGAGTTTGCAGTGATGCTGCTGACACACTCAAAAACAAGCTCAAAGCTATTGACCCACGTGCTGACGCCACAAAGTGCTTTTACTACATAGTGTTGTACGCTGCAGCTCTTGTTAACCCGTTTGGTACAACCGATATAAGCACCACTTCTTGCATACTTTGCCTGGAGAACAGTGCGGTGGCACAAGGGTCAAGTCATGGAGTAGAACTGTGGAAGCTGGGTTTCGCGTTGATGGGTGTTTGTATCGGTGTTGTGCTTGCTATTGTGATGATTGTTGTGTACAGGAAGTGGGATGAGAGAAAGAGGCAGAGTGTTTATCACAGGGAGATTGAGAAGAAGGTGAGGGCATGTGTTTTGCCTAATGCTGGTGCGAAATGGTTTCATGTAGAGGAGCTTGAGCGTGCAACTGAGAGATTTTCGCGGAAGAATGTGGTTGGACAAGGTGGTGATGGGGTTGTGTATAAAGGTACTCTTTCTGATGGTGCTGTTGTTGCTGTTAAGGAGATTTATTATTTGGAGGGTAAAGGGGATGAAGAGTTTTGCTATGAAGTGGAGATCATAAGCAGAATAAAGCACAGGAATCTTCTTGCTCTTCGTGGCTGTTGCATTTCAAGTGATGATTTGGAAGGCAAGAGAAGGTTTTTGGTTTATGATTTTATGCCTAATGGGAGTCTGAGTGACCAAATGTGTTGTTATGGTGCTAATAGGCTAACATGGCCACAAAGGAAGAGCATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCATCGTGACATAAAGCCTACCAACATACTTTTGGATTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCAAGCAAGGTTCTGAGGATGAGTCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATGTAGCACCAGAGTATGCTCTGTATGGGCAACTAACTGAGAAAACTGATGTCTATAGTTTTGGTATTGTTATTCTTGAAATCATGAGTGGAAGAAAAGTGCTTGATGTTATGGATTCATCTGCTGCTTTAATTACAGATTGGGTATGGACAATGACAGAATCTGGAAAGATGGAAGAAGTTTTTGATCAATCAATAAGAGAAGGGCAAGAAAAAATTATGGAAAGGTTTGTTCTTGTTGGAATGTTATGTTCTCATTCGGCTGTGGCATTAAGGCCTACTATTGTTGAGGCCCTTAAGATGTTAGAAGGAGTAATTGACATTCCCCAATTACCTGAGAGACCAATGCCACTGGGTCATGAGTCCTTCCAATCTTCTTTGTTGCATGGTTTACAAAGAAGTGGTTGA 1851 0.4371 MGPKRKECLFSTTNSKMDKQWILFLLHLMPLFAVFTHGAASSTCPMDLSYVGSIPWDTSICREDPIDKKHCCDTLRSVFAIGLAERLKDHHIFYLPDPNTSSACLHDFTRRLSALSIPQNMVPFCFPNPSRFVFNSSACLGIRTVEDWNFTVGDDTPLNSTCNGDLKDKTRCRVCSDAADTLKNKLKAIDPRADATKCFYYIVLYAAALVNPFGTTDISTTSCILCLENSAVAQGSSHGVELWKLGFALMGVCIGVVLAIVMIVVYRKWDERKRQSVYHREIEKKVRACVLPNAGAKWFHVEELERATERFSRKNVVGQGGDGVVYKGTLSDGAVVAVKEIYYLEGKGDEEFCYEVEIISRIKHRNLLALRGCCISSDDLEGKRRFLVYDFMPNGSLSDQMCCYGANRLTWPQRKSIILDVAKGLAYLHYEIKPPIYHRDIKPTNILLDSKMNAKLADFGLAKQGSEDESHLTTRVAGTYGYVAPEYALYGQLTEKTDVYSFGIVILEIMSGRKVLDVMDSSAALITDWVWTMTESGKMEEVFDQSIREGQEKIMERFVLVGMLCSHSAVALRPTIVEALKMLEGVIDIPQLPERPMPLGHESFQSSLLHGLQRSG 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01066 616 FunFam Receptor-like serine/threonine-protein kinase At4g25390 276 391 - -
Viun8g01066 616 Pfam SPARK 40 198 IPR043891 -
Viun8g01066 616 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 392 591 - -
Viun8g01066 616 Pfam Protein kinase domain 312 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01066 616 Gene3D Transferase(Phosphotransferase) domain 1 392 591 - -
Viun8g01066 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Viun8g01066 616 Gene3D Phosphorylase Kinase; domain 1 272 391 - -
Viun8g01066 616 SUPERFAMILY Protein kinase-like (PK-like) 294 584 IPR011009 -
Viun8g01066 616 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 206 597 - -
Viun8g01066 616 ProSiteProfiles Protein kinase domain profile. 311 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01066 616 SMART serkin_6 311 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01066 Viun-Chr8 12801227 12803344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01066 39 613 Receptor kinase-like Gene Family AT1G11050 47.841 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Viun8g01066 Pkinase 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01066 - - gmx:100800481 892.493