Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01065 ATGATCCTTACCTTCATGTTGCTCTTCACCATTCTCATAGTTGCTGTTGCTGCATCTTCTTCATGCCCCATGGATCTCACCTATGTTAAAACCATTCCCTGGAACGCTTCAATCTGCAACAAAGACCCTGTTAACAAAGATCTCTGCTGTCAAGAACTTTCGAGCATCTTCGGCATAGGCCTTGCTGAACATCTCAAAGAAACATCTATGTTTTACCTTCCTGATCTAAACACTTCCTCCACTTGCTTATCTGATTTCAAACACAACCTTGCAGCCATCTCAGTGAAACCAAACATAGTCTCTTTTTGCTTCCCTAACCCAACCCAGTTTGTCACCAACTCTTCAGCTTGTGCAGGGATTACAACTCTACAAGATTGGAACCAAAAGGTCGCCATGGATGGCCCAGTGAAAACATCGTGCAAAGGGGACCTTAAAGACCAAACCCTCTGCAGTAATTGCATTGACGCTGCTTTAGAATTGGTTTCCAATCTGAAACGTACTGACCCAAATGCCAACAGATGTTTTTACTACACAGTTCTATACGTTGCAGCTGTTGCTAATCCGTTTGGGACCACAGATCTGAGCACTACTGGATGCATACTTGGCATGACACAACCATCTAATGCAGGAAGAAAAGGGTCATCAAACAAAAGAAGAAAAAAGATCAAGCTTGTAATTACGTTGTTGGGTGTTGTTGTTGGTGTTGTGTTTGGTTTTGCTCTTGCTCTGATGGTCGTGTACAGGAAGTGGGATAAGAGAAGAAAGGAAAACGTTCGTCGCAGGGAAGTTGAAAACGAGGTTAGGGCTGGTGTTTTGCCTGGTACAGGTGCTAAATGGTTGCAGATATCAGAGCTGGAACGTGGCACGAGTAAATTTTCCGAGAGTAATGTGATTGGGAAAGGTGGTGATGGGATTGTGTACAAAGGGGCTCTTTCAGATGGCACTGTGGTTGCGGTGAAGGAAATTTTTGATTTGGAAAGTAAAGGCGATGAAGAGTTCTGCTATGAAGTTGGGATCATAAGCACAATAAAGCACAGGAATCTTCTTGCTCTTCGGGGTTGTTGTGTTACAAGTGATAGTTTGAAAGGTAAGAGGAGGTTTTTGATTTATGAGTTTATGCCTAATGGAAGCCTGAGTGATCATTTGTGTTGTTATGGTGGTAATAGGCTAACATGGCCAGAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCATCGTGACATAAAAGCTACCAACATACTTTTGGACTCCAAAATGCATGCTAAATTGGCAGATTTTGGGTTGGCCAAACAGGGTAATGATGGTGAATCTCATCTAACTACAGGGGTTGCTGGCACTTATGGTTATGTAGCACCAGAATATGCACTGTATGGGCAACTTAGTGAGAAAAGTGATGTGTACAGTTTCGGTATTGTGATTCTGGAAATCATGAGTGGAAGAAAAGTGCTTGATGCTTTGAATTCTTCCACGGATTCAGTTACAGATTGGGTATGGGCACTTGCAGAATCTGGAAAGATGGAGGAGATTTTTGATGAGTCAATAAGAGAAGGGTCAGTGAAAAATATGGTAAGGTTTGTTCATGTTGGAATGTTATGTGCTCATTTGGTAGTGGCGTTTAGACCTACTATTGTTGAGGCCCTTAAGATGTTAGAAGGTGACATTGAGATTCCTGAATTACCTGAGAGGCCAGTGCCACTTGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAGAGAAGTGGTTGA 1794 0.4247 MILTFMLLFTILIVAVAASSSCPMDLTYVKTIPWNASICNKDPVNKDLCCQELSSIFGIGLAEHLKETSMFYLPDLNTSSTCLSDFKHNLAAISVKPNIVSFCFPNPTQFVTNSSACAGITTLQDWNQKVAMDGPVKTSCKGDLKDQTLCSNCIDAALELVSNLKRTDPNANRCFYYTVLYVAAVANPFGTTDLSTTGCILGMTQPSNAGRKGSSNKRRKKIKLVITLLGVVVGVVFGFALALMVVYRKWDKRRKENVRRREVENEVRAGVLPGTGAKWLQISELERGTSKFSESNVIGKGGDGIVYKGALSDGTVVAVKEIFDLESKGDEEFCYEVGIISTIKHRNLLALRGCCVTSDSLKGKRRFLIYEFMPNGSLSDHLCCYGGNRLTWPERKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMHAKLADFGLAKQGNDGESHLTTGVAGTYGYVAPEYALYGQLSEKSDVYSFGIVILEIMSGRKVLDALNSSTDSVTDWVWALAESGKMEEIFDESIREGSVKNMVRFVHVGMLCAHLVVAFRPTIVEALKMLEGDIEIPELPERPVPLGHASFQSSLLHGLQRSG 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01065 597 SMART serkin_6 292 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01065 597 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 150 580 - -
Viun8g01065 597 Gene3D Phosphorylase Kinase; domain 1 252 372 - -
Viun8g01065 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Viun8g01065 597 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 373 572 - -
Viun8g01065 597 Pfam Protein kinase domain 293 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01065 597 ProSiteProfiles Protein kinase domain profile. 292 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01065 597 Pfam SPARK 18 174 IPR043891 -
Viun8g01065 597 SUPERFAMILY Protein kinase-like (PK-like) 277 565 IPR011009 -
Viun8g01065 597 FunFam Receptor-like serine/threonine-protein kinase At4g25390 257 372 - -
Viun8g01065 597 Gene3D Transferase(Phosphotransferase) domain 1 373 570 - -
Viun8g01065 597 CDD STKc_IRAK 298 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01065 Viun-Chr8 12791875 12794177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01065 14 594 Receptor kinase-like Gene Family AT1G11050 46.885 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Viun8g01065 Pkinase 3.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01065 - - vra:106763645 956.051