Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01060 ATGGAAAACCACGTCACATTACTCCTTCTCTTCCTCTTCATCACCATTCTCTTACCAGGTGCTGCTCCTTCATCTTGTCCAATCAACTTCACCTACGTTCAAACCTTCCCCTGGAACACTTCAACTTGCACAAACAAAACCAACACACAACCCTGTTGCTCAACCCTCAAAACCATCTTCCACATAGGCCTCTCCCAACATCTCAAACAAACATCTTTTTTTCAACTTCCCAATGAAAACACTTCCTCCGTTTGCTTACAAGATTTCCAAGAAAAGCTCACAACCTTGTCAATTCACCCATCTCTGGTCTCTTCTTGTTTCCCTGACCCCTCTCAGTTCGTCACAAACTCTTCCACTTGTGCAGGTGTTGTGACTTCTCGAGATTGGGAACTGAAGGTGAACTTGGTTAGACTTAGCCCGGTGCAAACTTTCTGCAAAGACCTTCATGACCAAACTAGCTGCCACAATTGCATAGCAGCAAGCTTGAAAGTGGCTCTTCAACTTACTAGTGATAACCCAAATGCTACAGAGAGGGATTGTTTCTCCTTCGCATCGCTGTATGCTGCAGCGGTGGTTAATCCAGAAGGCACAAATGATGTCACCACGATCGGTTGCATATTGGGCGTGCAACTTTCTAGCGAAGTGATGGCAAAAGGGTCATCGAATAAGAGAGGAAAAGTTCTGAAGGTGGTTTTTACGTTATTGGGTGCTGCTGTTGGGGTTATTATTGTTTTTGTGGTGGTGGTGGTTATGTACAGGAAGTGGGAGAGGAGAAGGAAGGAAAATGTTTATCACAGGGAAATCGAAAACGGTGTGAGGAACAGTGTTTTGACGAACACTGGTGCGAAATGGTTTCACATATCGGAGCTTGAGCGTGCCACTAACAGATTTTCGAGGAGGAATAAGGTTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGAAACTTGCGGATGGCACTTTGATTGGTGTTAAGGAGAGTTTGAATTTGCAAAGTAAAGGGGATGAAGAGTTCTGCTATGAGGTGGATATCATAAGCAAAATAAAGCACAGGAATCTTCTTGCTCTTCGTGGTTGTTGCATTTCAAGTGATAGTTTCAAAGGTAAGAGGAGGTTTCTGGTTTATGATTTCATGCCAAATGGAAACCTGAGTTACCAACTTTCAGTTGGTGGATTAACATGGCCACAAAGGAAGAACGTGATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCACCGGTTTATCATCGTGACATAAAGCCTACAAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCATGCAAGGTAGTGAGGACCAGAGTCCTCTCGCCACAAGGGTTGCTGGCACATATGGTTATGTGGCACCTGAGTATGCTTTATATGGGAAACTCACTGAGAAGAGTGATGTGTATAGTTTTGGTATTGTGATTCTGGAAATCATGAGTGGAAGAAAAGTGCTTGATACTTTGAATTCATCTGCTGATGCAATCACGGATTGGGTGTGGACACTAGCAGAATCGGGAAAGATGAGGGAAATTTTTGATGAGTCAATAAGAGAAGGGCCAGGGAAAGTTATGGAAAGGTATGTTCATGTGGGAATGCTTTGTGCTCATGCAATGGCTGCTTTGAGACCTACCATTGCTGAGGCTCTTAAGATGTTAGAGGGTGACACTGATGTTCCTGAATTACCAGATAGGCCTGTGCCTTTGGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAAGGAAGTGGAAGATCTATGCAACATGTTTCATCCTATTCATAA 1830 0.4372 MENHVTLLLLFLFITILLPGAAPSSCPINFTYVQTFPWNTSTCTNKTNTQPCCSTLKTIFHIGLSQHLKQTSFFQLPNENTSSVCLQDFQEKLTTLSIHPSLVSSCFPDPSQFVTNSSTCAGVVTSRDWELKVNLVRLSPVQTFCKDLHDQTSCHNCIAASLKVALQLTSDNPNATERDCFSFASLYAAAVVNPEGTNDVTTIGCILGVQLSSEVMAKGSSNKRGKVLKVVFTLLGAAVGVIIVFVVVVVMYRKWERRRKENVYHREIENGVRNSVLTNTGAKWFHISELERATNRFSRRNKVGQGGDGVVYKGKLADGTLIGVKESLNLQSKGDEEFCYEVDIISKIKHRNLLALRGCCISSDSFKGKRRFLVYDFMPNGNLSYQLSVGGLTWPQRKNVILDVAKGLAYLHYEIKPPVYHRDIKPTNILLDSKMNAKLADFGLAMQGSEDQSPLATRVAGTYGYVAPEYALYGKLTEKSDVYSFGIVILEIMSGRKVLDTLNSSADAITDWVWTLAESGKMREIFDESIREGPGKVMERYVHVGMLCAHAMAALRPTIAEALKMLEGDTDVPELPDRPVPLGHASFQSSLLHGLQGSGRSMQHVSSYS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01060 609 Pfam SPARK 22 181 IPR043891 -
Viun8g01060 609 SUPERFAMILY Protein kinase-like (PK-like) 276 567 IPR011009 -
Viun8g01060 609 Gene3D Phosphorylase Kinase; domain 1 258 377 - -
Viun8g01060 609 Gene3D Transferase(Phosphotransferase) domain 1 378 573 - -
Viun8g01060 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Viun8g01060 609 Pfam Protein kinase domain 298 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01060 609 ProSiteProfiles Protein kinase domain profile. 297 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01060 609 SMART serkin_6 297 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01060 609 FunFam Receptor-like serine/threonine-protein kinase At4g25390 262 377 - -
Viun8g01060 609 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 144 583 - -
Viun8g01060 609 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 378 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01060 Viun-Chr8 12723597 12725502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01060 22 596 Receptor kinase-like Gene Family AT1G11050 46.634 2.89e-175 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Viun8g01060 Pkinase 4.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01060 - - gmx:100798901 941.028