Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01057 ATGGATAAGCAAGTGGTTCTTCTTTCTCTCCTAATCTTGTTCTTCACTGTTTCCATATCTGGTGTTTCATCCACCACATCCACATGCCCCATGGATCTCAGCTATATTGAGACCTTTCCATGGGATACTTCATCCTGCAGAGACCCTGTTGATAAGGAGCACTGTTGCCAAGCTTTGCTCAGTGTAATTGGCATGGGGATAGCCCAACACCTCAAAGACACTTCCTACTTTCAACTTCCTGATGAAAACACTTCCTCCACCTGTTTGTCAGATTTCCAAACCAAAATCTCAGCTTTGTCAATTAACTCCTCTTTGGTCCCTTATTGTTTTCCTAGAGCTTCTGAGCTTGTTACCAACGCTTCCACTTGTGCAGGAATCATAACTGTGGATGATTGGAAGAAGAAAGTGGGTATGATTAGCCCTTTGGACACTTCTTGCAACGGGGACCTCAGTGATCAAACTCGTTGCAGCATATGTATTGATGCTGGTCTCAAAGTGACTTCCCTACTCAAGGGTTTGGACCCAAATGCCACAAAGTGCTTTTACTTCACAGTTTTGTATGCCACAGCTATTGTTAACCAGTACGGTCCATCAAATTTGGGCACCGCTGCTTGCATACTGGGCATGCCGCTATCGGTGAAAGGTTCATCGAATAAAAAACAAGAGCTGAAACTTGTTTTTGGGTTGGTGGGTGCTGTTACTGGTGTTGTGCTTGGTTTTGTGTTGATTGTGGTGTACAGAAAGTGGGATAAGAGAAGGAAGGAAGATAATTATCACAGGTCGGTTGAAAACGGGGTGAGGAACAGTGTTTTGCCTAATACCGGTGCCAAATGGTTTCACATATCGGAGCTTGAGCGAGCCACGGGTAAGTTTTCTCAGAGGAATATGGTTGGGCAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTCAGATGGCACTGTGGTTGCGGTGAAGGAAATTTTTGATTTGGAGACAAAAGGGGATGAAGATTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTCCTCTTCGGGGCTGCTGCATTTCAAGTGATAATTTGAAAGGTAAGAGAAGGTTTCTGGTTTATGATTTCATGCCAAATGGAAGCCTGAGTTACCAGTTATCAGTTTCTGGTGCCAATAGGCTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAAGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCATCGTGACATAAAGGCTACGAACATACTTTTGGATTCAAAAATGAAAGCCAAAGTGTCAGATTTTGGGTTGGCGAAGCAAGGGAACGATGGGCAGTCTCATCTCACCACAAGGGTTGCCGGCACATATGGTTATTTGGCACCAGAGTATGCTCTTTATGGGCAACTGACAGAGAAGAGTGATGTGTATAGTTTTGGCATTGTGATTCTTGAGATCATGAGTGGAAGAAAAGTGCTTGATACCATGAATTCATCGGTTGTTTTGATCACGGATTGGGCATGGACACTGGCAAAATCAGGGAACATGGAAGACATTTTTGACCAGTCAATAAAGGAAGAGGGACCAGAGAAGATCATGGAAAGGTTTGTTCTTGTGGGAATACTCTGTGCTCATGCAATGGTGGCTTTAAGACCTACTATTGCTGAAGCCCTTAAGATGTTAGAGGGTGACATTGACATACCCCAGTTACCAGACAGACCTGTGCCATTGGGTCATGAGACCTTCCAATCTTCTTTGCTGCATGGTATGCAAACTAGTGTAGGATCATCCTCATATTTTTCTTCATATCTTGCATCTTATTCAACAAGCACCAGAACAACATAG 1854 0.4347 MDKQVVLLSLLILFFTVSISGVSSTTSTCPMDLSYIETFPWDTSSCRDPVDKEHCCQALLSVIGMGIAQHLKDTSYFQLPDENTSSTCLSDFQTKISALSINSSLVPYCFPRASELVTNASTCAGIITVDDWKKKVGMISPLDTSCNGDLSDQTRCSICIDAGLKVTSLLKGLDPNATKCFYFTVLYATAIVNQYGPSNLGTAACILGMPLSVKGSSNKKQELKLVFGLVGAVTGVVLGFVLIVVYRKWDKRRKEDNYHRSVENGVRNSVLPNTGAKWFHISELERATGKFSQRNMVGQGGDGVVYKGTLSDGTVVAVKEIFDLETKGDEDFCYEVEIISKIKHRNLLPLRGCCISSDNLKGKRRFLVYDFMPNGSLSYQLSVSGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNDGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSSVVLITDWAWTLAKSGNMEDIFDQSIKEEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPQLPDRPVPLGHETFQSSLLHGMQTSVGSSSYFSSYLASYSTSTRTT 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01057 617 SMART serkin_6 291 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01057 617 FunFam Receptor-like serine/threonine-protein kinase At4g25390 256 371 - -
Viun8g01057 617 Gene3D Phosphorylase Kinase; domain 1 252 371 - -
Viun8g01057 617 PANTHER OS01G0750732 PROTEIN 45 582 - -
Viun8g01057 617 SUPERFAMILY Protein kinase-like (PK-like) 276 581 IPR011009 -
Viun8g01057 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Viun8g01057 617 ProSiteProfiles Protein kinase domain profile. 291 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01057 617 Pfam SPARK 24 180 IPR043891 -
Viun8g01057 617 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 372 572 - -
Viun8g01057 617 Pfam Protein kinase domain 293 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01057 617 Gene3D Transferase(Phosphotransferase) domain 1 372 570 - -
Viun8g01057 617 CDD STKc_IRAK 297 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01057 Viun-Chr8 12676392 12678596 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01057 24 598 Receptor kinase-like Gene Family AT1G11050 51.078 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Viun8g01057 Pkinase 5.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01057 - - gmx:100820563 1013.45