Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01056 ATGAGAAACCCTTCATCAACATCAACAACCAAGAGCAAGAAAAGTGGTGGTGGTGCTAACAGCACTACCACCAGCTACAACAGCACCAACACCACCAACAACAACATTGGTAGCACCAGCAATAACAATGGTTCCAACACCAACACTCCATGCTGCAGCAAGGTTGGATTGAAGAGAGGACCATGGACACCGGAAGAAGATGAGGTGTTAGCCAATTACATCAAGAAAGAAGGTGAAGGGCGTTGGAGAACGCTCCCCAAGCGTGCTGGCCTTCTCCGGTGCGGCAAAAGCTGCCGTCTCCGGTGGATGAACTACCTCCGCCCCTCCGTCAAACGCGGCCACATCGCCCCTGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTTGGCAACCGGTGGTCGTTGATTGCTGGGAGGATTCCCGGAAGAACGGATAATGAAATAAAGAATTACTGGAACACCCATCTAAGTAAAAAGCTCATTAGCCAAGGGATTGATCCCAGAACTCACAAGCCTCTTAACCCACCATCCATGAATATGAATATTCCTTCTTCTTCCACTGTTCCTCCACCCTCTATGCCTCCTCCAATGACCATCACCACCCACAACCCTTTGCATGATTTCACTGTTGTTAACCAAGGAATTCATGCGATTCATCATTTGGGTCAGCAACACCACCAGCCTCCGGTTTCAAACCCCTTTGATAATAACAACATTAACAATCAAGTGGCTGCTGTCGCAGATGATGTTTCTGCAATGGGGTTCATGGACAGTGAGGATTGCAACGATGACATCAACATCAATTACTACTCAGATGATGTTTTTTCTTCCTTCCTCAACTCCTTGATCAACGAAGATGCTTTTGCGTCGCAGCAGCACCACGTGCAAACAGAGCTCCCAAGTGAGCGTTGCATTCCACTGCCATGCGATGATCGTGTGGATGATCCTCTGGTTTCAATCACCACTGCTTCTACATCACAGGGTTACGATGATGACCTTGGGGTTCTCTGGGAATCACCTCTCGTGCCTTCTACTACTTTCACCCATCACGTTAACGACCCTATCATCAAGATGGCTCATGATCACCATCACCACAACCAATAG 1107 0.4878 MRNPSSTSTTKSKKSGGGANSTTTSYNSTNTTNNNIGSTSNNNGSNTNTPCCSKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSMNMNIPSSSTVPPPSMPPPMTITTHNPLHDFTVVNQGIHAIHHLGQQHHQPPVSNPFDNNNINNQVAAVADDVSAMGFMDSEDCNDDININYYSDDVFSSFLNSLINEDAFASQQHHVQTELPSERCIPLPCDDRVDDPLVSITTASTSQGYDDDLGVLWESPLVPSTTFTHHVNDPIIKMAHDHHHHNQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01056 368 SMART sant 58 108 IPR001005 -
Viun8g01056 368 SMART sant 111 159 IPR001005 -
Viun8g01056 368 Gene3D - 56 112 - -
Viun8g01056 368 Pfam Myb-like DNA-binding domain 117 157 IPR001005 -
Viun8g01056 368 Pfam Myb-like DNA-binding domain 59 106 IPR001005 -
Viun8g01056 368 MobiDBLite consensus disorder prediction 1 49 - -
Viun8g01056 368 CDD SANT 117 157 IPR001005 -
Viun8g01056 368 SUPERFAMILY Homeodomain-like 56 153 IPR009057 -
Viun8g01056 368 FunFam Myb transcription factor 56 112 - -
Viun8g01056 368 ProSiteProfiles Myb-like domain profile. 54 106 IPR001005 -
Viun8g01056 368 FunFam transcription repressor MYB5-like 116 182 - -
Viun8g01056 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 106 IPR017930 -
Viun8g01056 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 161 IPR017930 -
Viun8g01056 368 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 49 187 - -
Viun8g01056 368 ProSiteProfiles Myb-like domain profile. 107 157 IPR001005 -
Viun8g01056 368 CDD SANT 61 106 IPR001005 -
Viun8g01056 368 Gene3D - 116 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01056 Viun-Chr8 12656013 12658051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01056 45 286 MYB Transcription Factor Family AT3G13540 55.372 1.22e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g01056 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01056 K09422 - gmx:100797847 479.174