Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun8g01055 | ATGTCGAGGATTTGCGTGAAGAATCTTCCGAAACATGTTGCGGAGGATGAGCTACGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTCAAGCTCATGCGTACCAAAGATGGTAAGAGTCGGCAATTCGCGTTTATAGGGTATCGAACAGAAAATGAAGCTCATGAAGCCATTCGATATTTCAATAATTCTTTCCTTCGCACATCTAAAATTACATGTGAGGTAGCTCGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGAGTCGCCATTCGAAGAAGAAAGACGACAAAGGGACTGCGCCGGATGTGGGGAAACCTGCTAGAGCTAAGGGCCGGAAAGAAAATTTGAAGAATGGGGTGGATGTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACGTCCGGTTTGACCAGTGTTGGCAACAACCAAGCAGTCTCAAATAAGGATAATGAAAGTGCATCAGTTTCAACTGATGACAGTGGCTCATTAGAAGATGGATTTCTGGATATTTCTCAACCCAGCAGCAAGTCACTTGAGCCTGAACGTGACGAGGTCATTTCAGATATGGATTATTTCAAGAGTAGGGTGACGAAAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGATAATGACGACAGTGATGATAATGATGACTCATCTGTTGACAATGATGACAAAGATGATAATGGTGGTGTTAATGAAGATGGAAAAAGTAGTGATCCAAGAAACGATGCTCGAGAGGTAGACGTAGAGGAGGGCAAAGAAGATACTGGTGGAGAGAATGTTACCCATGAAAAGTCTCAAGTAGATGTGACTGAGCATGGGGGCCAATTATCAAAAACAGAAGACGTGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACGACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTATCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGCATAGCGTATATTCTTTATACAGCTCCAGAATTTGCTGCCAGGGCTCTGAAAGAGTTTGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCCAAAACCCTCAAAAAACAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCGTGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATATGGTGTAGATAAAAGTGATTTACTTGACGGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGAAACAAAAAAGGCATTTAAAAATGCTGGTGTAAATGTTGAGGTCTTGGAGGAACTTGCTAATAACAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCCACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCATTATACTTGGAGTGGGCTCCTAACAATATTCTTAGCCAAAGTTCAACATCAAAAAATGATGACATGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAAAACGTGGAAAGAATAACAGATGTTGATATTGATCCGGACAGAGTAGAGGCTCGGTCCCTATTTGTCAAGAACCTAAATTTCAGGACAACAGATGAAAATCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTCGTTGAGTTTGACTCCCCTGAAACTGCTACAAATATTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGTCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGCGCAGAAACAAAAGTCAATTAAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGATAAGGATCTAAGGCGATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACATCTAGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTTCTCAATTTAGTGACGAACACAATGGATTTCAAGGTGCTATTAAGTTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGATTTGATGACTAG | 2547 | 0.4095 | MSRICVKNLPKHVAEDELREFFSEKGIITDVKLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSFLRTSKITCEVARKLGDENLPRPWSRHSKKKDDKGTAPDVGKPARAKGRKENLKNGVDVDDPQLQDFLQVMQPRVNSKMWANDTSGLTSVGNNQAVSNKDNESASVSTDDSGSLEDGFLDISQPSSKSLEPERDEVISDMDYFKSRVTKEWSDSESSDEDNDDSDDNDDSSVDNDDKDDNGGVNEDGKSSDPRNDAREVDVEEGKEDTGGENVTHEKSQVDVTEHGGQLSKTEDVKGVFESCRLFVRNLPYTTTEEELEEHFSHIGSISQVHLVVDKDTKRSKGIAYILYTAPEFAARALKEFDNSIFQGRLLHVMPALQRHSENQENNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKYGVDKSDLLDGEADDLAVRIALGETQVISETKKAFKNAGVNVEVLEELANNKIDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPNNILSQSSTSKNDDMNGAIGENDAKRQILEQNVERITDVDIDPDRVEARSLFVKNLNFRTTDENLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNICRDLQGTVLDSHALILQPCHVKNDAQKQKSIKKDKSSTKLLVRNVAFEATDKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTASQFSDEHNGFQGAIKLSKKRKDVDILDEGKMKFGRFDD | 848 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun8g01055 | 848 | SUPERFAMILY | RNA-binding domain, RBD | 611 | 709 | IPR035979 | GO:0003676 | |
Viun8g01055 | 848 | Gene3D | - | 210 | 395 | IPR012677 | - | |
Viun8g01055 | 848 | Gene3D | - | 496 | 597 | IPR012677 | - | |
Viun8g01055 | 848 | Gene3D | - | 718 | 820 | IPR012677 | - | |
Viun8g01055 | 848 | SUPERFAMILY | RNA-binding domain, RBD | 305 | 389 | IPR035979 | GO:0003676 | |
Viun8g01055 | 848 | SUPERFAMILY | RNA-binding domain, RBD | 712 | 801 | IPR035979 | GO:0003676 | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 83 | 122 | - | - | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 389 | 418 | - | - | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 241 | 294 | - | - | |
Viun8g01055 | 848 | SUPERFAMILY | RNA-binding domain, RBD | 499 | 590 | IPR035979 | GO:0003676 | |
Viun8g01055 | 848 | CDD | RRM6_RBM19_RRM5_MRD1 | 722 | 796 | - | - | |
Viun8g01055 | 848 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 722 | 798 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | FunFam | - | 277 | 424 | - | - | |
Viun8g01055 | 848 | Gene3D | - | 1 | 122 | IPR012677 | - | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 146 | 294 | - | - | |
Viun8g01055 | 848 | CDD | RRM5_RBM19_like | 623 | 701 | IPR034423 | - | |
Viun8g01055 | 848 | Coils | Coil | 397 | 417 | - | - | |
Viun8g01055 | 848 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 79 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 502 | 574 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | FunFam | Multiple RNA-binding domain-containing protein 1 | 493 | 595 | - | - | |
Viun8g01055 | 848 | FunFam | Nucleotide/nucleic acid binding protein | 618 | 713 | - | - | |
Viun8g01055 | 848 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 83 | IPR035979 | GO:0003676 | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 146 | 191 | - | - | |
Viun8g01055 | 848 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 309 | 379 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 504 | 565 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 624 | 698 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 72 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 724 | 791 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 83 | 125 | - | - | |
Viun8g01055 | 848 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 622 | 705 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 399 | 418 | - | - | |
Viun8g01055 | 848 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 307 | 385 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | SMART | rrm2_1 | 3 | 75 | IPR003954 | GO:0003676 | |
Viun8g01055 | 848 | SMART | rrm2_1 | 308 | 381 | IPR003954 | GO:0003676 | |
Viun8g01055 | 848 | SMART | rrm2_1 | 623 | 703 | IPR003954 | GO:0003676 | |
Viun8g01055 | 848 | SMART | rrm2_1 | 723 | 794 | IPR003954 | GO:0003676 | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 220 | 240 | - | - | |
Viun8g01055 | 848 | CDD | RRM1_MRD1 | 2 | 77 | - | - | |
Viun8g01055 | 848 | Gene3D | - | 615 | 717 | IPR012677 | - | |
Viun8g01055 | 848 | PANTHER | RNA-BINDING MOTIF PROTEIN 14B | 709 | 802 | - | - | |
Viun8g01055 | 848 | SMART | rrm1_1 | 3 | 75 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | SMART | rrm1_1 | 623 | 701 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | SMART | rrm1_1 | 503 | 570 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | SMART | rrm1_1 | 723 | 794 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | SMART | rrm1_1 | 308 | 381 | IPR000504 | GO:0003723 | |
Viun8g01055 | 848 | MobiDBLite | consensus disorder prediction | 192 | 219 | - | - | |
Viun8g01055 | 848 | FunFam | Multiple RNA-binding domain-containing protein 1 | 716 | 822 | - | - | |
Viun8g01055 | 848 | CDD | RRM4_RBM19_RRM3_MRD1 | 502 | 573 | - | - | |
Viun8g01055 | 848 | FunFam | RNA-binding motif protein 19 | 1 | 100 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun8g01055 | Viun-Chr8 | 12634094 | 12642698 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun8g01055 | 615 | 814 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 31.455 | 3.68e-13 | 71.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun8g01055 | K14787 | - | gmx:100798742 | 1353.19 |