Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01055 ATGTCGAGGATTTGCGTGAAGAATCTTCCGAAACATGTTGCGGAGGATGAGCTACGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTCAAGCTCATGCGTACCAAAGATGGTAAGAGTCGGCAATTCGCGTTTATAGGGTATCGAACAGAAAATGAAGCTCATGAAGCCATTCGATATTTCAATAATTCTTTCCTTCGCACATCTAAAATTACATGTGAGGTAGCTCGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGAGTCGCCATTCGAAGAAGAAAGACGACAAAGGGACTGCGCCGGATGTGGGGAAACCTGCTAGAGCTAAGGGCCGGAAAGAAAATTTGAAGAATGGGGTGGATGTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACGTCCGGTTTGACCAGTGTTGGCAACAACCAAGCAGTCTCAAATAAGGATAATGAAAGTGCATCAGTTTCAACTGATGACAGTGGCTCATTAGAAGATGGATTTCTGGATATTTCTCAACCCAGCAGCAAGTCACTTGAGCCTGAACGTGACGAGGTCATTTCAGATATGGATTATTTCAAGAGTAGGGTGACGAAAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGATAATGACGACAGTGATGATAATGATGACTCATCTGTTGACAATGATGACAAAGATGATAATGGTGGTGTTAATGAAGATGGAAAAAGTAGTGATCCAAGAAACGATGCTCGAGAGGTAGACGTAGAGGAGGGCAAAGAAGATACTGGTGGAGAGAATGTTACCCATGAAAAGTCTCAAGTAGATGTGACTGAGCATGGGGGCCAATTATCAAAAACAGAAGACGTGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACGACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTATCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGCATAGCGTATATTCTTTATACAGCTCCAGAATTTGCTGCCAGGGCTCTGAAAGAGTTTGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCCAAAACCCTCAAAAAACAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCGTGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATATGGTGTAGATAAAAGTGATTTACTTGACGGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGAAACAAAAAAGGCATTTAAAAATGCTGGTGTAAATGTTGAGGTCTTGGAGGAACTTGCTAATAACAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCCACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCATTATACTTGGAGTGGGCTCCTAACAATATTCTTAGCCAAAGTTCAACATCAAAAAATGATGACATGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAAAACGTGGAAAGAATAACAGATGTTGATATTGATCCGGACAGAGTAGAGGCTCGGTCCCTATTTGTCAAGAACCTAAATTTCAGGACAACAGATGAAAATCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTCGTTGAGTTTGACTCCCCTGAAACTGCTACAAATATTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGTCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGCGCAGAAACAAAAGTCAATTAAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGATAAGGATCTAAGGCGATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACATCTAGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTTCTCAATTTAGTGACGAACACAATGGATTTCAAGGTGCTATTAAGTTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGATTTGATGACTAG 2547 0.4095 MSRICVKNLPKHVAEDELREFFSEKGIITDVKLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSFLRTSKITCEVARKLGDENLPRPWSRHSKKKDDKGTAPDVGKPARAKGRKENLKNGVDVDDPQLQDFLQVMQPRVNSKMWANDTSGLTSVGNNQAVSNKDNESASVSTDDSGSLEDGFLDISQPSSKSLEPERDEVISDMDYFKSRVTKEWSDSESSDEDNDDSDDNDDSSVDNDDKDDNGGVNEDGKSSDPRNDAREVDVEEGKEDTGGENVTHEKSQVDVTEHGGQLSKTEDVKGVFESCRLFVRNLPYTTTEEELEEHFSHIGSISQVHLVVDKDTKRSKGIAYILYTAPEFAARALKEFDNSIFQGRLLHVMPALQRHSENQENNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKYGVDKSDLLDGEADDLAVRIALGETQVISETKKAFKNAGVNVEVLEELANNKIDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPNNILSQSSTSKNDDMNGAIGENDAKRQILEQNVERITDVDIDPDRVEARSLFVKNLNFRTTDENLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNICRDLQGTVLDSHALILQPCHVKNDAQKQKSIKKDKSSTKLLVRNVAFEATDKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTASQFSDEHNGFQGAIKLSKKRKDVDILDEGKMKFGRFDD 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01055 848 SUPERFAMILY RNA-binding domain, RBD 611 709 IPR035979 GO:0003676
Viun8g01055 848 Gene3D - 210 395 IPR012677 -
Viun8g01055 848 Gene3D - 496 597 IPR012677 -
Viun8g01055 848 Gene3D - 718 820 IPR012677 -
Viun8g01055 848 SUPERFAMILY RNA-binding domain, RBD 305 389 IPR035979 GO:0003676
Viun8g01055 848 SUPERFAMILY RNA-binding domain, RBD 712 801 IPR035979 GO:0003676
Viun8g01055 848 MobiDBLite consensus disorder prediction 83 122 - -
Viun8g01055 848 MobiDBLite consensus disorder prediction 389 418 - -
Viun8g01055 848 MobiDBLite consensus disorder prediction 241 294 - -
Viun8g01055 848 SUPERFAMILY RNA-binding domain, RBD 499 590 IPR035979 GO:0003676
Viun8g01055 848 CDD RRM6_RBM19_RRM5_MRD1 722 796 - -
Viun8g01055 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 722 798 IPR000504 GO:0003723
Viun8g01055 848 FunFam - 277 424 - -
Viun8g01055 848 Gene3D - 1 122 IPR012677 -
Viun8g01055 848 MobiDBLite consensus disorder prediction 146 294 - -
Viun8g01055 848 CDD RRM5_RBM19_like 623 701 IPR034423 -
Viun8g01055 848 Coils Coil 397 417 - -
Viun8g01055 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Viun8g01055 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 574 IPR000504 GO:0003723
Viun8g01055 848 FunFam Multiple RNA-binding domain-containing protein 1 493 595 - -
Viun8g01055 848 FunFam Nucleotide/nucleic acid binding protein 618 713 - -
Viun8g01055 848 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Viun8g01055 848 MobiDBLite consensus disorder prediction 146 191 - -
Viun8g01055 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 379 IPR000504 GO:0003723
Viun8g01055 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 565 IPR000504 GO:0003723
Viun8g01055 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 624 698 IPR000504 GO:0003723
Viun8g01055 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Viun8g01055 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 724 791 IPR000504 GO:0003723
Viun8g01055 848 MobiDBLite consensus disorder prediction 83 125 - -
Viun8g01055 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 622 705 IPR000504 GO:0003723
Viun8g01055 848 MobiDBLite consensus disorder prediction 399 418 - -
Viun8g01055 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Viun8g01055 848 SMART rrm2_1 3 75 IPR003954 GO:0003676
Viun8g01055 848 SMART rrm2_1 308 381 IPR003954 GO:0003676
Viun8g01055 848 SMART rrm2_1 623 703 IPR003954 GO:0003676
Viun8g01055 848 SMART rrm2_1 723 794 IPR003954 GO:0003676
Viun8g01055 848 MobiDBLite consensus disorder prediction 220 240 - -
Viun8g01055 848 CDD RRM1_MRD1 2 77 - -
Viun8g01055 848 Gene3D - 615 717 IPR012677 -
Viun8g01055 848 PANTHER RNA-BINDING MOTIF PROTEIN 14B 709 802 - -
Viun8g01055 848 SMART rrm1_1 3 75 IPR000504 GO:0003723
Viun8g01055 848 SMART rrm1_1 623 701 IPR000504 GO:0003723
Viun8g01055 848 SMART rrm1_1 503 570 IPR000504 GO:0003723
Viun8g01055 848 SMART rrm1_1 723 794 IPR000504 GO:0003723
Viun8g01055 848 SMART rrm1_1 308 381 IPR000504 GO:0003723
Viun8g01055 848 MobiDBLite consensus disorder prediction 192 219 - -
Viun8g01055 848 FunFam Multiple RNA-binding domain-containing protein 1 716 822 - -
Viun8g01055 848 CDD RRM4_RBM19_RRM3_MRD1 502 573 - -
Viun8g01055 848 FunFam RNA-binding motif protein 19 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01055 Viun-Chr8 12634094 12642698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01055 615 814 Eukaryotic Initiation Factors Gene Family AT1G49760 31.455 3.68e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01055 K14787 - gmx:100798742 1353.19