Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01052 ATGATCCCACCACCGGCTGTGAGCATCGCACTTTACTCCATCCAAGCCAAGCAGATCAGCAACTCACATCTTCATTCTTCCTCTCCCACGAAAACGAAGGTGAAGTCGACGAAGATGTTGAAGACGAAGACGTTGAAGACGAAAGCATTCCAAGGCGCCAACGTGTTCATGTCGCGAAACCTCGTGCCGCCCGAAGTGTTCGACGCGCTGCACGATGCTGTTAAAGATAACGGTGCTCAACTCCACCTCTGCTGCGATCCCTCCCGTAACGGCCCCGACGATTACCACATCATTGCTTCCAGTAAACACGAGAAGTTCGATGATCTCAAATCCAAGGGCTGCAAGTTGCTCGGACCTAGATGTGTTCTTTCGTGTGCCAAAGGTGGAAAGCCTTTGCCTAAACAAGGCTTCACTTGTTGTCTTGCCATGGATGGCGTCAAAGTACTTGCATCTGGCTTTGATACGGAAGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGAGTTCTACACACTAAAACATCGTTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTAGGAAGTACAAGTGGGCTTTGAATGAATTGAAGAAACCAATAGTCACATATGAATGGTTAAAACAATGCTCGGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCTGCAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCCGCAGAATTGACGAAGAATTGCACACATTTGATTTCTGAGGCTCCTCAAGGTGACAAGTACAAGGTAGCAAAACGATGGGGCCACATTCATATTGTGATAAGGAAATGGTTTGATCAATCAATTGCTCGAAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAACATAGCCAAGAAAAGGATATCGGGAAATTGCAAGGTGCGGCATCCTCAGGTACTACAGATTCAAGTGTGCGAGCTTCTTGTGCTGAGCTCATTGATAGAGATCATGAAGCTATGCCATCAGAATGTATGTCCTCTGTTCCACAAACCCGTATATTTGCTAAGGAGGCAGATGCTGAAGCTCCATTGCAGACCAGTGGTGAATTGAACCTTGACAATGTTGTTGCTGATGATTCTGAATCTGATGATAATGGCTTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTTTAGAAATGCGGAAACTAATTAATATTGTGCGCAAAGGTGGAGGCTCTCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAAAGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTAAAAAGAAAGAAGTCCCTGTGCTTAGGAGACACATTGCGTATGATCTACTTCATCCAAAAGCAAGCTTGGTAAAAGGAGATGTAACAGAAAGCACATCAATGGATCACAGTAAAAGCTCCAGCTGTCATCAAAGCTCGCATCAGGTGGACTTTGAAATTGTGAAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGATAAAAGATATGGATATAAATGGTCACTCATTCCGTAAAGCAAATTGTAGAACTATGTTGCAAGATCAACTTCCTGATAATAAATTGAGCACACAAAGAATGAGCCAGCATGACTTCAGTGTTCAAAATGAAAAATCAGCAAATGTTTTCAGAGGGAAACTGTTTTGTTTTTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAATCAAGGGGGAGGAGAGGTAATTAGTGGGCAAGCAAAACAGATTGTCCGCTATACTGTTGAGTGTCATGGTGTAACACCCATGTTGGCTGGTGATTCCAAGAGTTTGTATGTTTCCAGTCACTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGTCATGTTCCCTTGCCTGGATTTGAAAGCTTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGAAATCTCCTAAGAAACTTGTGTTTTGTTCTAGGAGCAAAATTTGGGGAGAAGCTGCATAAGAAGGTTACGCATTTGTTGTGTAAATTCACCAATGGACCCAAGTATGATGGTGCTCGTAAATGGGGGATTCAATCAGTTACATGTGAATGGATATTTGAGTGCGTCAAACAGAATGGAGTTGTTGCCATTGATCAATTTTTACCAAAAGAAGTAACTGCTCAAGATCGAGAGGCGGGACTTTGTACCGTGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAGTTGTCAAGTCAATCACAAATTTTGAGAGGCATCACAAATAAAAATGTGGGTTGTGGAGTTGGTAATCATGAGACCAATTTTAAGAAACCAAGTGTTTATAGTAAAAAGGCCAGACTTGTGGAAGAGTCTTGCCTAGCTAATAAGATGCCTTCGGCATCAAATTCAGGTATTCATGCCTATGGAAAGAATTTTTCTGAAGACAATATGCTAGTAGATGGTGGGGAGGTTTGTCGTACTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGGTCAGAGGTCTCCAGCACAGACAGGGTGTCAGAGCGGTATTTACCCATCTGATCTTTCAGTCCTTGGTGAAGATAATTCCAATCCTCATACCGTTTTTGGGTTATCAAAACACTGGTTAAACAGAAGTGACAGAAAAGAAGATGATGGGGAGGCTTCTCAAGACAGACGAACAGGAATATACGATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCAGGAAGGCAAAGCCTTATAGATAAATACCGAACTCGAAGTAGCACGCAGTGA 3045 0.4207 MIPPPAVSIALYSIQAKQISNSHLHSSSPTKTKVKSTKMLKTKTLKTKAFQGANVFMSRNLVPPEVFDALHDAVKDNGAQLHLCCDPSRNGPDDYHIIASSKHEKFDDLKSKGCKLLGPRCVLSCAKGGKPLPKQGFTCCLAMDGVKVLASGFDTEEKVKIEELVAEMGGVLHTKTSLDLNFVIVKNVLARKYKWALNELKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPADVRKEMEKLILQNGGKYSAELTKNCTHLISEAPQGDKYKVAKRWGHIHIVIRKWFDQSIARRACLNEEFFPVQHGSVSSHKVTRDLTMQHSQEKDIGKLQGAASSGTTDSSVRASCAELIDRDHEAMPSECMSSVPQTRIFAKEADAEAPLQTSGELNLDNVVADDSESDDNGLYLSECRILLVGFEALEMRKLINIVRKGGGSRYMSFNDKLTHIVVGNPTEKEKKDVRSLAALGVIYVVKTSWLEDCDRKKKEVPVLRRHIAYDLLHPKASLVKGDVTESTSMDHSKSSSCHQSSHQVDFEIVKPESLEKRKEEIKDMDINGHSFRKANCRTMLQDQLPDNKLSTQRMSQHDFSVQNEKSANVFRGKLFCFSNLFPEEKRGEIVQWINQGGGEVISGQAKQIVRYTVECHGVTPMLAGDSKSLYVSSHWIRSCLEAGSLLDVDSHILYSPLPCHVPLPGFESFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLHKKVTHLLCKFTNGPKYDGARKWGIQSVTCEWIFECVKQNGVVAIDQFLPKEVTAQDREAGLCTVSQFPTQAAQMISDMPSQLSSQSQILRGITNKNVGCGVGNHETNFKKPSVYSKKARLVEESCLANKMPSASNSGIHAYGKNFSEDNMLVDGGEVCRTVPDVAAAIEDLLEQTSKMHGQRSPAQTGCQSGIYPSDLSVLGEDNSNPHTVFGLSKHWLNRSDRKEDDGEASQDRRTGIYDGFSETQTESQVVGYEEDLSGRQSLIDKYRTRSSTQ 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01052 1014 SUPERFAMILY BRCT domain 229 314 IPR036420 -
Viun8g01052 1014 SMART BRCT_7 701 777 IPR001357 -
Viun8g01052 1014 SMART BRCT_7 47 129 IPR001357 -
Viun8g01052 1014 SMART BRCT_7 415 495 IPR001357 -
Viun8g01052 1014 SMART BRCT_7 227 304 IPR001357 -
Viun8g01052 1014 SMART BRCT_7 605 681 IPR001357 -
Viun8g01052 1014 SMART BRCT_7 140 217 IPR001357 -
Viun8g01052 1014 SUPERFAMILY BRCT domain 417 499 IPR036420 -
Viun8g01052 1014 Gene3D BRCT domain 141 228 IPR036420 -
Viun8g01052 1014 ProSiteProfiles BRCT domain profile. 603 691 IPR001357 -
Viun8g01052 1014 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 51 1013 - -
Viun8g01052 1014 FunFam Transcription coactivator 600 697 - -
Viun8g01052 1014 SUPERFAMILY BRCT domain 665 788 IPR036420 -
Viun8g01052 1014 SUPERFAMILY BRCT domain 606 693 IPR036420 -
Viun8g01052 1014 FunFam Transcription coactivator 395 505 - -
Viun8g01052 1014 Gene3D BRCT domain 399 502 IPR036420 -
Viun8g01052 1014 Gene3D BRCT domain 78 137 IPR036420 -
Viun8g01052 1014 ProSiteProfiles BRCT domain profile. 225 314 IPR001357 -
Viun8g01052 1014 ProSiteProfiles BRCT domain profile. 704 787 IPR001357 -
Viun8g01052 1014 FunFam DNA topoisomerase II binding protein 1 230 322 - -
Viun8g01052 1014 CDD BRCT_TopBP1_rpt2_like 229 304 - -
Viun8g01052 1014 Pfam twin BRCT domain 708 769 IPR001357 -
Viun8g01052 1014 Pfam twin BRCT domain 233 296 IPR001357 -
Viun8g01052 1014 Gene3D BRCT domain 698 792 IPR036420 -
Viun8g01052 1014 MobiDBLite consensus disorder prediction 977 992 - -
Viun8g01052 1014 CDD BRCT_TopBP1_rpt2_like 702 777 - -
Viun8g01052 1014 SUPERFAMILY BRCT domain 102 226 IPR036420 -
Viun8g01052 1014 CDD BRCT 146 213 - -
Viun8g01052 1014 ProSiteProfiles BRCT domain profile. 143 227 IPR001357 -
Viun8g01052 1014 Pfam BRCT domain, a BRCA1 C-terminus domain 605 688 IPR001357 -
Viun8g01052 1014 Gene3D BRCT domain 229 315 IPR036420 -
Viun8g01052 1014 Gene3D BRCT domain 600 697 IPR036420 -
Viun8g01052 1014 ProSiteProfiles BRCT domain profile. 413 505 IPR001357 -
Viun8g01052 1014 FunFam Transcription coactivator 140 229 - -
Viun8g01052 1014 Pfam BRCA1 C Terminus (BRCT) domain 143 213 IPR001357 -
Viun8g01052 1014 Pfam BRCA1 C Terminus (BRCT) domain 414 491 IPR001357 -
Viun8g01052 1014 MobiDBLite consensus disorder prediction 960 1014 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01052 Viun-Chr8 12553142 12572939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01052 47 1012 Core DNA Replication Machinery Family AT1G77320 50.245 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01052 K10728 - gmx:100804966 1565.82