Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01051 ATGTTGAAGACGAAGACGTTGAAGACGAAAGCATTCCAAGGCGCCAACGTGTTCATGTCGCGAAACCTCGTGCCGCCCGAAGTGTTCGACGCGCTGCACGATGCTGTTAAAGATAACGGTGCTCAACTCCACCTCTGCTGCGATCCCTCCCGTAACGGCCCCGACGATTACCACATCATTGCTTCCAGTAAACACGAGAAGTTCGATGATCTCAAATCCAAGGGCTGCAAGTTGCTCGGACCTAGATGTGTTCTTTCGTGTGCCAAAGGTGGAAAGCCTTTGCCTAAACAAGGCTTCACTTGTTGTCTTGCCATGGATGGCGTCAAAGTACTTGCATCTGGCTTTGATACGGAAGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGAGTTCTACACACTAAAACATCGTTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTAGGAAGTACAAGTGGGCTTTGAATGAATTGAAGAAACCAATAGTCACATATGAATGGTTAAAACAATGCTCGGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCTGCAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCCGCAGAATTGACGAAGAATTGCACACATTTGATTTCTGAGGCTCCTCAAGGTGACAAGTACAAGGTAGCAAAACGATGGGGCCACATTCATATTGTGATAAGGAAATGGTTTGATCAATCAATTGCTCGAAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAACATAGCCAAGAAAAGGATATCGGGAAATTGCAAGGTGCGGCATCCTCAGGTACTACAGATTCAAGTGTGCGAGCTTCTTGTGCTGAGCTCATTGATAGAGATCATGAAGCTATGCCATCAGAATGTATGTCCTCTGTTCCACAAACCCGTATATTTGCTAAGGAGGCAGATGCTGAAGCTCCATTGCAGACCAGTGGTGAATTGAACCTTGACAATGTTGTTGCTGATGATTCTGAATCTGATGATAATGGCTTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTTTAGAAATGCGGAAACTAATTAATATTGTGCGCAAAGGTGGAGGCTCTCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAAAGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTAAAAAGAAAGAAGTCCCTGTGCTTAGGAGACACATTGCGTATGATCTACTTCATCCAAAAGCAAGCTTGGTAAAAGGAGATGTAACAGAAAGCACATCAATGGATCACAGTAAAAGCTCCAGCTGTCATCAAAGCTCGCATCAGGTGGACTTTGAAATTGTGAAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGATAAAAGATATGGATATAAATGGTCACTCATTCCGTAAAGCAAATTGTAGAACTATGTTGCAAGATCAACTTCCTGATAATAAATTGAGCACACAAAGAATGAGCCAGCATGACTTCAGTGTTCAAAATGAAAAATCAGCAAATGTTTTCAGAGGGAAACTGTTTTGTTTTTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAATCAAGGGGGAGGAGAGGTAATTAGTGGGCAAGCAAAACAGATTGTCCGCTATACTGTTGAGTGTCATGGTGTAACACCCATGTTGGCTGGTGATTCCAAGAGTTTGTATGTTTCCAGTCACTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGTCATGTTCCCTTGCCTGGATTTGAAAGCTTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGAAATCTCCTAAGAAACTTGTGTTTTGTTCTAGGAGCAAAATTTGGGGAGAAGCTGCATAAGAAGGTTACGCATTTGTTGTGTAAATTCACCAATGGACCCAAGTATGATGGTGCTCGTAAATGGGGGATTCAATCAGTTACATGTGAATGGATATTTGAGTGCGTCAAACAGAATGGAGTTGTTGCCATTGATCAATTTTTACCAAAAGAAGTAACTGCTCAAGATCGAGAGGCGGGACTTTGTACCGTGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAGTTGTCAAGTCAATCACAAATTTTGAGAGGCATCACAAATAAAAATGTGGGTTGTGGAGTTGGTAATCATGAGACCAATTTTAAGAAACCAAGTGTTTATAGTAAAAAGGCCAGACTTGTGGAAGAGTCTTGCCTAGCTAATAAGATGCCTTCGGCATCAAATTCAGGTATTCATGCCTATGGAAAGAATTTTTCTGAAGACAATATGCTAGTAGATGGTGGGGAGGTTTGTCGTACTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGGTCAGAGGTCTCCAGCACAGACAGGGTGTCAGAGCGGTATTTACCCATCTGATCTTTCAGTCCTTGGTGAAGATAATTCCAATCCTCATACCGTTTTTGGGTTATCAAAACACTGGTTAAACAGAAGTGACAGAAAAGAAGATGATGGGGAGGCTTCTCAAGACAGACGAACAGGAATATACGATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCAGGAAGGCAAAGCCTTATAGATAAATACCGAACTCGAAGTAGCACGCAGTGA 2931 0.4173 MLKTKTLKTKAFQGANVFMSRNLVPPEVFDALHDAVKDNGAQLHLCCDPSRNGPDDYHIIASSKHEKFDDLKSKGCKLLGPRCVLSCAKGGKPLPKQGFTCCLAMDGVKVLASGFDTEEKVKIEELVAEMGGVLHTKTSLDLNFVIVKNVLARKYKWALNELKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPADVRKEMEKLILQNGGKYSAELTKNCTHLISEAPQGDKYKVAKRWGHIHIVIRKWFDQSIARRACLNEEFFPVQHGSVSSHKVTRDLTMQHSQEKDIGKLQGAASSGTTDSSVRASCAELIDRDHEAMPSECMSSVPQTRIFAKEADAEAPLQTSGELNLDNVVADDSESDDNGLYLSECRILLVGFEALEMRKLINIVRKGGGSRYMSFNDKLTHIVVGNPTEKEKKDVRSLAALGVIYVVKTSWLEDCDRKKKEVPVLRRHIAYDLLHPKASLVKGDVTESTSMDHSKSSSCHQSSHQVDFEIVKPESLEKRKEEIKDMDINGHSFRKANCRTMLQDQLPDNKLSTQRMSQHDFSVQNEKSANVFRGKLFCFSNLFPEEKRGEIVQWINQGGGEVISGQAKQIVRYTVECHGVTPMLAGDSKSLYVSSHWIRSCLEAGSLLDVDSHILYSPLPCHVPLPGFESFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLHKKVTHLLCKFTNGPKYDGARKWGIQSVTCEWIFECVKQNGVVAIDQFLPKEVTAQDREAGLCTVSQFPTQAAQMISDMPSQLSSQSQILRGITNKNVGCGVGNHETNFKKPSVYSKKARLVEESCLANKMPSASNSGIHAYGKNFSEDNMLVDGGEVCRTVPDVAAAIEDLLEQTSKMHGQRSPAQTGCQSGIYPSDLSVLGEDNSNPHTVFGLSKHWLNRSDRKEDDGEASQDRRTGIYDGFSETQTESQVVGYEEDLSGRQSLIDKYRTRSSTQ 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01051 976 Gene3D BRCT domain 103 190 IPR036420 -
Viun8g01051 976 FunFam Transcription coactivator 562 659 - -
Viun8g01051 976 FunFam Transcription coactivator 357 467 - -
Viun8g01051 976 MobiDBLite consensus disorder prediction 922 976 - -
Viun8g01051 976 Pfam twin BRCT domain 195 258 IPR001357 -
Viun8g01051 976 Pfam twin BRCT domain 670 731 IPR001357 -
Viun8g01051 976 CDD BRCT_TopBP1_rpt2_like 664 739 - -
Viun8g01051 976 SUPERFAMILY BRCT domain 191 276 IPR036420 -
Viun8g01051 976 Pfam BRCT domain, a BRCA1 C-terminus domain 567 650 IPR001357 -
Viun8g01051 976 ProSiteProfiles BRCT domain profile. 375 467 IPR001357 -
Viun8g01051 976 SUPERFAMILY BRCT domain 64 188 IPR036420 -
Viun8g01051 976 FunFam DNA topoisomerase II binding protein 1 192 284 - -
Viun8g01051 976 SUPERFAMILY BRCT domain 627 750 IPR036420 -
Viun8g01051 976 CDD BRCT 108 175 - -
Viun8g01051 976 Gene3D BRCT domain 41 99 IPR036420 -
Viun8g01051 976 Gene3D BRCT domain 562 659 IPR036420 -
Viun8g01051 976 CDD BRCT_TopBP1_rpt2_like 191 266 - -
Viun8g01051 976 Gene3D BRCT domain 660 754 IPR036420 -
Viun8g01051 976 Gene3D BRCT domain 361 464 IPR036420 -
Viun8g01051 976 SUPERFAMILY BRCT domain 379 461 IPR036420 -
Viun8g01051 976 MobiDBLite consensus disorder prediction 939 954 - -
Viun8g01051 976 ProSiteProfiles BRCT domain profile. 105 189 IPR001357 -
Viun8g01051 976 Gene3D BRCT domain 191 277 IPR036420 -
Viun8g01051 976 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 13 975 - -
Viun8g01051 976 ProSiteProfiles BRCT domain profile. 187 276 IPR001357 -
Viun8g01051 976 SMART BRCT_7 102 179 IPR001357 -
Viun8g01051 976 SMART BRCT_7 567 643 IPR001357 -
Viun8g01051 976 SMART BRCT_7 189 266 IPR001357 -
Viun8g01051 976 SMART BRCT_7 9 91 IPR001357 -
Viun8g01051 976 SMART BRCT_7 377 457 IPR001357 -
Viun8g01051 976 SMART BRCT_7 663 739 IPR001357 -
Viun8g01051 976 FunFam Transcription coactivator 102 191 - -
Viun8g01051 976 Pfam BRCA1 C Terminus (BRCT) domain 105 175 IPR001357 -
Viun8g01051 976 Pfam BRCA1 C Terminus (BRCT) domain 376 453 IPR001357 -
Viun8g01051 976 ProSiteProfiles BRCT domain profile. 565 653 IPR001357 -
Viun8g01051 976 SUPERFAMILY BRCT domain 568 655 IPR036420 -
Viun8g01051 976 ProSiteProfiles BRCT domain profile. 666 749 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01051 Viun-Chr8 12553139 12572939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01051 9 974 Core DNA Replication Machinery Family AT1G77320 50.245 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01051 K10728 - gmx:100804966 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01051 8 12553139 12572939 Viun8g01051 8 12553139 12572939 ECH