Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01045 ATGTGGAGAGAGATAGCAGTGACGGTGTTGGTGTTTCTACTGCACCAAATAAACGGAGAAGATTATGGTTGCTCCCCCTCTTCCTGTGGCAAAATCAGGAACATATCTTATCCATTTCGATTGAAAGGAGACCCAGAAAAGTGCGGTCCGTATGAGCTATCTTGTGAAAACAATATAACGCTATTATCTTTGCTCTCTGGAAGATTTAATGTGGAGGCCATCAACTACAATAATTTCACAATGCGAGTGGTGGATCCTGGACTTCAACAATCAAACTGCTCTTCCCTTCCTCGCTATTTCTTGTCTCCATCCAATTTTACTGATTCTCACACCGACACCTTGGATATGTACGAAACTCAGTATATAGTGTTTTTGAGTTGTAGCCATGGAGTGAGTGGGAAGCGAAAGTACGTGGATACTGGTGGATGCCTGAATTGGGACTCCAAAGGTTACACATACGCTATGGCTGGTGACCTATTAGCAGAGGACTTAGAAGTTGGTTGTGATGTAAAGCTGGTTGCTCCCACATCGTGGTGGGGTTTGGACACAAATAATTATTCCTACGCCATGATCCACACATCGCTACTCTATGGATTTCACCTTTTTTGGCTTCCTCTCGTCTGCAAGGATCGTTGTGGATTTGGTAATAACGACTGCCATTTCAATTATTCCACCCAGAGCGCTGAATGCTATCCTGGATTGATTTTACCAATATTTAGACCAGAACGATATGGTGGAACTTATATCACTAAAGATGTTGGATATGCCATTACGCTTGAACCAAAATTAGTTAATTTGGGACGTTGTGTTCGATACTTCTTATATAGATATGTTGCTGGCATGATATTGTTTATTGCTCTTTTGATATATAAATGGAAAAGAAGACATTCATCGATATATGAAAATATTGAAAACTATTTAGAGGAAAATAGCTTGATGCCTATTCGATATTCGTATAAGGAAATTAAGAAGATGGCCACAGGTTTCAATGAAAAATTGGGTGAAGGAGGATATGGCTCTGTATTCAAGGGAAAGTTGCGCAGTGGACCTTGTGTTGCCATAAAAGTGTTACGAAAATCAAAAGGTAATGGACAAGACTTTATCAATGAAGTTGCAACAATTGGAAGAATACATCATCACAATGTAGTGCATTTAATTGGATATTGTGCTGAAGGCTCAAAACGTGCCCTTGTTTACGAGTTCATGCATAATGGATCTCTTGATAAATTTATATTTTCTAAAGAAGGAAATACGCATTTAACCTATGACACAATACATGATATAGCAATTGGAGTAGCACATGGAATTTCGTATCTACATCATGGGTGTGACATGCAAATTTTGCATTTTGACATCAAACCCCACAACATCCTACTTGATGAAAAATTCACTCCAAAGATTTCTGACTTTGGATTGGCCAAACTATATTCAACAGACAAAAGTGTTGTGACTATGACAGCAGCAAGAGGAACAATTGGGTATATAGCTCCTGAGTTGTTTTATAATAATGTTGGAAGAATATCAAATAAATCTGATGTTTATAGTTTTGGAATGTTTTTGATGGAAATAGCAAGCAAGAGGAAAAACCTAAACCCCCATGCAGAACATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTAATAAAGGGAAAGATTTAGAAATGGAAGATGTCAGAGATTTTGAGAACAAAATTATAAAAAAGATGATCATTGTTTCACTTTGGTGTATACAGTTGAAACCAAATGACCGTCCTTCCATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAAACCTAAAATTACCTCCAAAACCTTCTTTGTATCCACATGAAACATTGGAAGATAGCCAAAGAATGTGCTCTCACCAAACAACATTGTCCCACTTTGTTGGTTCTTCAAGTTATTCTGTAGCCTCTAATGTTCCACTAGATGAAAGTATTTGA 1959 0.3757 MWREIAVTVLVFLLHQINGEDYGCSPSSCGKIRNISYPFRLKGDPEKCGPYELSCENNITLLSLLSGRFNVEAINYNNFTMRVVDPGLQQSNCSSLPRYFLSPSNFTDSHTDTLDMYETQYIVFLSCSHGVSGKRKYVDTGGCLNWDSKGYTYAMAGDLLAEDLEVGCDVKLVAPTSWWGLDTNNYSYAMIHTSLLYGFHLFWLPLVCKDRCGFGNNDCHFNYSTQSAECYPGLILPIFRPERYGGTYITKDVGYAITLEPKLVNLGRCVRYFLYRYVAGMILFIALLIYKWKRRHSSIYENIENYLEENSLMPIRYSYKEIKKMATGFNEKLGEGGYGSVFKGKLRSGPCVAIKVLRKSKGNGQDFINEVATIGRIHHHNVVHLIGYCAEGSKRALVYEFMHNGSLDKFIFSKEGNTHLTYDTIHDIAIGVAHGISYLHHGCDMQILHFDIKPHNILLDEKFTPKISDFGLAKLYSTDKSVVTMTAARGTIGYIAPELFYNNVGRISNKSDVYSFGMFLMEIASKRKNLNPHAEHSSQLYFPFWIYDQLNKGKDLEMEDVRDFENKIIKKMIIVSLWCIQLKPNDRPSMNKVVEMLEGDIENLKLPPKPSLYPHETLEDSQRMCSHQTTLSHFVGSSSYSVASNVPLDESI 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01045 652 FunFam serine/threonine-protein kinase PBS1-like 295 401 - -
Viun8g01045 652 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Viun8g01045 652 SMART serkin_6 327 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01045 652 PANTHER RUST RESISTANCE KINASE LR10-RELATED 300 617 IPR045874 GO:0004672
Viun8g01045 652 Pfam Wall-associated receptor kinase galacturonan-binding 24 85 IPR025287 GO:0030247
Viun8g01045 652 Gene3D Transferase(Phosphotransferase) domain 1 402 611 - -
Viun8g01045 652 SUPERFAMILY Protein kinase-like (PK-like) 311 598 IPR011009 -
Viun8g01045 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Viun8g01045 652 Gene3D Phosphorylase Kinase; domain 1 301 401 - -
Viun8g01045 652 Pfam Protein kinase domain 330 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01045 652 FunFam PR5-like receptor kinase 402 608 - -
Viun8g01045 652 ProSiteProfiles Protein kinase domain profile. 327 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01045 Viun-Chr8 12367676 12380650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01045 24 639 Receptor kinase-like Gene Family AT5G38260 34.891 5.51e-113 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01045 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01045 - - gmx:100305367 858.211