Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01041 ATGAGCTTGGATTCTGGTGACAATAGAATTGTTGAAACAGAAAAGAGATTAGGCGTGAGCATGTGGATAGAGAGAGCATTGATAGTGTTGGTGCTTCTACTCCACCAAATTGACGGAGGAGATGGTTGCCTCGCCTCTTCCTGCGGCAAAATCAGAAACATATCTTATCCATTCCGATTGAAAGGAGATCCAGAAGGGTGCGGTCTCCGCGAGTACGAGCTATCTTGTGAAAACAATACAACGCTGTTATCTTTGCTCTCGGGAACGTTTCATGTGAAGGCCATCAACTACAATAATTTCACAATTCGAGTTGTGGATCCTGGACTTCAACAACCGAACTGCTCCTCTCTTCCTCGCTATTTCTTGTCTCCATCCAATTTCACTGATTCTTACGCCAACGTCTTGAATCCCTACCAAACAAGTTATGAGAAGTTTGTTAACGAGCATATAGTGTTTTTGAATTGTAGCCATGGAGTGAGTGGTAACCGAAAGTACGTGGATACTGGTGGATGCCTGAATTGGGACTCCAAAGGTTACACATATGCTATGGCTGGTGACCTTGAAGCAGAGGACTTAGAAGTTGGTTGTGATGTAAAGCTGGTTGCTCCCACATCTTGGTGGGGGTTGAACCCAAATAATTATTCCTACGCCATGATGCACACAGCGCTTGTCTATGGATTTTACCTTTCTTGGATTCGTCTCGTCTGCGAGCATACTTGTGGATTTGATAATCATACCTACTGCCATTTCAATGATTCCACCCACAGCGTTCAATGCTTAAATGATGCGATACCTTCGGAGCCTTCGGCCTTCAGACCTCCGCGGCTACTGCATTCTTTAGAAGTGGCTATTTCTAGTATCTTAAAAGGATTTTTTATAGCAATATTTAGACCAAAGCAATATGTTGGAATTTATTACACTGCAAATCATCCACATGACATGGAGTATGAACCACGATTAGTTAAGTTAGGACACTACGTTGGATACTTCATAATTAGATATGTTCTTGGCATGATATTGTTTATTATTCTTTTGGTATACAAATGGAGAAGAAGACATTCATCAGTATATGAAAATATTGAAAATTATTTACAGCAAAATAGCTTGATGCCTATTCGATACTCATACAAGGATATTAAGAAGATGACTAAAGGTTTTAATGAAAAATTGGGTGAAGGAGGTTATGGCTCTGTATTCAAGGGAAATTTGCGTAGTGGACCTTGTGTTGCCATAAAAGTATTACGAAAATCAAAAGGTAATGGACAAGACTTTATCAATGAAGTTGCTACAATTGGAAGAATACATCATCAAAATGTAGTGCATTTAATTGGATATTGTGCCGAAGGCTCAAAACGTGCCCTTGTTTACGAGTTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCTAAAGAAGGAAATATGCATTTAACCTATGACACAATACATGATATTGCAATTGGAGTAGCACATGGAATTTCGTATCTACATCATGGGTGTGACATGCAAATTTTGCATTTTGACATCAAACCCCACAACATCTTGCTTGATGAAAAATTCACTCCAAAGATTTCTGACTTTGGATTGGCCAAACTATATTCAACAGACAAAAGTGTTGTGACTATGACAGCAGCAAGAGGAACAATTGGGTATATGGCTCCAGAGTTGTTTTATAATAATGTTGGAAGAATATCAAATAAATCTGATGTTTACAGTTTTGGAATGTTTTTGATGGAAATAGCAAGCAAGAGGAAAAACCTAAACCCCCATGCAGAACATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTAATAAAGGGAAAGATTTAGAAATGGAAGATGTCAGAGATTTTGAGAACAAAATTATAAAAAAGATGAGCATTATTTCACTTTGGTGTATACAGTTGAAACCAAATGATCGTCCTTCCATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAAACCTAAAATTACCTCCAAAACCTTCTTTGTATCCGCATGAAACATTGGAAGATAGTCAAAGAATGTGCTTTCGCCAAACAACATTGTCCGACTTTGTTGGTTCTTCAACTTATTCCGTAGCCTCTAATGTTCCCCTAGATGAAAGTATTTGA 2130 0.3808 MSLDSGDNRIVETEKRLGVSMWIERALIVLVLLLHQIDGGDGCLASSCGKIRNISYPFRLKGDPEGCGLREYELSCENNTTLLSLLSGTFHVKAINYNNFTIRVVDPGLQQPNCSSLPRYFLSPSNFTDSYANVLNPYQTSYEKFVNEHIVFLNCSHGVSGNRKYVDTGGCLNWDSKGYTYAMAGDLEAEDLEVGCDVKLVAPTSWWGLNPNNYSYAMMHTALVYGFYLSWIRLVCEHTCGFDNHTYCHFNDSTHSVQCLNDAIPSEPSAFRPPRLLHSLEVAISSILKGFFIAIFRPKQYVGIYYTANHPHDMEYEPRLVKLGHYVGYFIIRYVLGMILFIILLVYKWRRRHSSVYENIENYLQQNSLMPIRYSYKDIKKMTKGFNEKLGEGGYGSVFKGNLRSGPCVAIKVLRKSKGNGQDFINEVATIGRIHHQNVVHLIGYCAEGSKRALVYEFMPNGSLDKFIFSKEGNMHLTYDTIHDIAIGVAHGISYLHHGCDMQILHFDIKPHNILLDEKFTPKISDFGLAKLYSTDKSVVTMTAARGTIGYMAPELFYNNVGRISNKSDVYSFGMFLMEIASKRKNLNPHAEHSSQLYFPFWIYDQLNKGKDLEMEDVRDFENKIIKKMSIISLWCIQLKPNDRPSMNKVVEMLEGDIENLKLPPKPSLYPHETLEDSQRMCFRQTTLSDFVGSSTYSVASNVPLDESI 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01041 709 FunFam PR5-like receptor kinase 459 665 - -
Viun8g01041 709 Pfam Wall-associated receptor kinase galacturonan-binding 43 106 IPR025287 GO:0030247
Viun8g01041 709 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Viun8g01041 709 PANTHER RUST RESISTANCE KINASE LR10-RELATED 357 674 IPR045874 GO:0004672
Viun8g01041 709 SMART serkin_6 384 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01041 709 FunFam serine/threonine-protein kinase PBS1-like 352 458 - -
Viun8g01041 709 Gene3D Phosphorylase Kinase; domain 1 358 458 - -
Viun8g01041 709 Pfam Protein tyrosine and serine/threonine kinase 386 654 IPR001245 GO:0004672|GO:0006468
Viun8g01041 709 SUPERFAMILY Protein kinase-like (PK-like) 368 655 IPR011009 -
Viun8g01041 709 Gene3D Transferase(Phosphotransferase) domain 1 459 668 - -
Viun8g01041 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Viun8g01041 709 ProSiteProfiles Protein kinase domain profile. 384 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01041 Viun-Chr8 12257788 12274193 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01041 47 679 Receptor kinase-like Gene Family AT1G66910 34.703 5.97e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01041 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01041 - - gmx:106794110 889.797