Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01037 ATGATGTGGAGAGAGATAGCAGTGACGGTGTTGGTGTTTCTACTGCACCAAATAGACGGAGAAGATGGTTGCTCCCCCTGTGGCAAAATCACCAACATATCTTCATGTGGGAAAATCAGGAACATATCTTATCCATTCCGATTGAAAGGAGATCCAGAAGGGTGCGGTCTGTTTGAGCTATCTTGTGAAAACAATATAACGCTCTTATCTTTGTTCTCTGGAAGATTTAATGTGGAGGCCATCAACTACAATAATTTTACAATCAGACTGGTGGATCCTGGACTTCAACAAACAAACTGCTCCTCCCTTCCTCGATATTCCTTGTCTTGGTACAATTTCTCTGATTATTCTTACCCCAACATCCTGGGGTATACGTATTATTTTCCGGTCGAACATATAGTGTTTTTGAGTTGTAACCATGGAGTGAGTGGGAACCGAAAGTACGTGGATACTGGTGGATGCCTGAATTGGGACTCCAAAAGTTACACATACGCTATGGCTGGTCACCTATTAGCAGAGGACTTAGAAGTTGGTTGTGATGTAAAGCTGGTTGCTCCCACATCGTGGTGGGATTTCGACAAAAATAATTATTCCTACGCCATGATGCACACAGCGCTACTCTATGGATTTCAGCTTTCGTGGCCTGATGGGGGATTTTATGAGAATAGATGCTGCTATTTCAATTCTTCCGATGACATGCTTGTATGCGAAAAGATGAGACCTTCGAGGCTGGTGGAATCTTTAGAGGCGGCTATTTTTAGTATCCTAAAAGGATTGGCTAAGGTAATATTTAGACCAAATCAATATGTTTTTATTAATTTAGATGAAGACTATGATGAAAATCGGTATGAACCAGGATTTGTTAGCTTGGGACACTATGTTATACCATACTTCATAGTTAGATATTTTGGTGGCATGATATTGTTTATTGTTCTTTTGGTATACAAATGGAGAAGAAGACATTTGTCTCTATATGAAAATATCGAAAATTATTTAGAGCAAAATAGCTTAATTCCTATTCGATACTCATATAAGGAGATTAAGAAGATGACCAGAGGTTTCAATGAAAAATTGGGAGAAGGAGGTTATGGATCTGTATTTAAGGGAAAGTTGCGTAGTGGACCTTGGGTTGCCATAAAAGTGTTACGAAAATCAAAAGGTAATGGACAAGACTTTATCAATGAAGTTGCAACAATTGGAAGAATACATCATCAAAATGTAGTGCATTTAATTGGATATTGTGCTGAGGGCTCAAAACGTGCCCTTGTTTATGAGTTCATGCCCAATGGATCTCTTGACAAATTTATATTTTCTAAAGAAGGAAATATACATTTAACCTATGACACAATACATGATATAGCAATTGGAGTAGCACAAGGAATTTCATATCTACATCATGGATGTGAGATGCAAATTTTGCATTTTGACATCAAGCCCCACAACATTCTACTTGATGCAAAATTTACCCCAAAGATTTCTGACTTTGGATTGGCAAAACTATATTCAACAGACAAAAGTGTTATGACTATGACAGCAGCAAGAGGAACAATCGGGTACATGGCTCCAGAATTATTTTATAAAAACATTGGAAGAATATCACATAAGTCTGATGTTTATAGCTTTGGAATGTTTCTAATGGAGATAGCAAGTAGGAGGAAAAACCTAAACCCCAATGTAGAGCATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATGAACAACTTGACAAAGGGAAAGATATTGAAATGGAAGATGCCATAGATGATGAGAACAAAATAGCAAAAAAGATGATCATAGTTTCACTTTGGTGCATACAATTGAAACCAAATGATCGTCCTTCCATGAATAAAGTAGTGGAAATGCTTGAAGAGGACATTGAAAACTTGAAAATACCTCCAAAACCTTCTCTATATCCTCATGAATCATTGGAAGATGGTCAAAGAACAAGCTTTAACCAAACAACAGTTTCTGACTTTGTTAGTTCTTCAAGTTTCCATGGAGACCGTGACTAA 2013 0.3736 MMWREIAVTVLVFLLHQIDGEDGCSPCGKITNISSCGKIRNISYPFRLKGDPEGCGLFELSCENNITLLSLFSGRFNVEAINYNNFTIRLVDPGLQQTNCSSLPRYSLSWYNFSDYSYPNILGYTYYFPVEHIVFLSCNHGVSGNRKYVDTGGCLNWDSKSYTYAMAGHLLAEDLEVGCDVKLVAPTSWWDFDKNNYSYAMMHTALLYGFQLSWPDGGFYENRCCYFNSSDDMLVCEKMRPSRLVESLEAAIFSILKGLAKVIFRPNQYVFINLDEDYDENRYEPGFVSLGHYVIPYFIVRYFGGMILFIVLLVYKWRRRHLSLYENIENYLEQNSLIPIRYSYKEIKKMTRGFNEKLGEGGYGSVFKGKLRSGPWVAIKVLRKSKGNGQDFINEVATIGRIHHQNVVHLIGYCAEGSKRALVYEFMPNGSLDKFIFSKEGNIHLTYDTIHDIAIGVAQGISYLHHGCEMQILHFDIKPHNILLDAKFTPKISDFGLAKLYSTDKSVMTMTAARGTIGYMAPELFYKNIGRISHKSDVYSFGMFLMEIASRRKNLNPNVEHSSQLYFPFWIYEQLDKGKDIEMEDAIDDENKIAKKMIIVSLWCIQLKPNDRPSMNKVVEMLEEDIENLKIPPKPSLYPHESLEDGQRTSFNQTTVSDFVSSSSFHGDRD 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01037 670 Pfam Wall-associated receptor kinase galacturonan-binding 35 92 IPR025287 GO:0030247
Viun8g01037 670 FunFam PR5-like receptor kinase 427 634 - -
Viun8g01037 670 Pfam Protein kinase domain 355 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01037 670 PANTHER RUST RESISTANCE KINASE LR10-RELATED 325 642 IPR045874 GO:0004672
Viun8g01037 670 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Viun8g01037 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Viun8g01037 670 Gene3D Phosphorylase Kinase; domain 1 327 426 - -
Viun8g01037 670 FunFam serine/threonine-protein kinase PBS1-like 323 426 - -
Viun8g01037 670 Gene3D Transferase(Phosphotransferase) domain 1 427 636 - -
Viun8g01037 670 MobiDBLite consensus disorder prediction 633 655 - -
Viun8g01037 670 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01037 670 SMART serkin_6 352 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01037 670 CDD STKc_IRAK 358 624 - -
Viun8g01037 670 SUPERFAMILY Protein kinase-like (PK-like) 336 623 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01037 Viun-Chr8 12130269 12145676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01037 24 653 Receptor kinase-like Gene Family AT5G38260 35.131 3.90e-110 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01037 Pkinase 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01037 - - gmx:100305367 877.47