Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01029 ATGAAAATGTTGCCAACTTCCACCGCCGGAGAGGCCAGCCACGGTGGCCGGACGGTGGTCGTGGGAGTGAAGATGGACTCCCACAGCACCGAGTTGCTCACCTGGGCTTTGTTCAAAGTGGCTCAGCCCTGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTTAATCGGGATGGGAAATCGTCTTTGTTTTCACTTGTCAAAGCTTTTGACTCTGTGCTTGCCGTTTACGAAGGGTTCTGCAATTTGAAACAGGTGGATCTTAAGTTCAAAATATGTCGGGGTTCATCAGTGAGGAGAATCCTGGTTCGAGAAGCAAATGCTTATTCTGCAACGCATATCATAGTTGGAAGTCCTCAAGGTCTTCACAGAATTCGGCCATATATATCTGTGGCAAGGTACTGTGCTAAGAAGCTACCAAGGGATTGTTGTGTTCTTGCTGTTAATAATGGGAAAATTGTGTTCAAGAGGGATGGATCACCAGTAACTGCAGCTGACATGAAAGGAGTTGATCAGAACCACGCAACTGGGGTGCCTAGTTCGATTCACAGGACACTTGGCAAGACTTCAAAAGTGCAAGATGATGATGGTAAGGGTAGTGGTCAATTTTCAGATCACAGTTTGGCTAAGGCTTTTCTGGATTCTAGAGAATTCATTGAGAAGAAGAGTTGCTCTGTTTGTTCTTCAAACCCGGCACTGTTTGGTTTATGTTGTAACCATTCAGAAGAAGAGTCTTGTGGGAATGCTTGTGACGAGAACCCTTTGGCAATAGTGTCTGTGCAGGCCAATGATTCTGTTTCTAAACCAGGTTGGCCACTGCTCCATAAGACAATTACATCTGACAGGAAATGTTCTGAAAGATCGCTGTTTCGCCAGATCTCTGTGGTACAATGGGCAATGCAGTTACCTTCTAGAAATCTTTCATATGCTGCACATCTTGAACAAAACACAAACAACTGTGGCCCAAATAAAGATCAGTTTTTGGGTCTAGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAAATAGGAACTCCCTCTGTGCCTGAACACAACTCTAGAAGCATTCCTAAGGAATTGGATGGCCTTCATGAGAGATACTCATCCAGTTGCCGATTGTTTAAGTACCAAGAACTTGTGTTGGCAACATCAAATTTCTTGCCAGAAAACTTGATTGGGAAAGGAGGAAGTAGCCAGGTATACAGAGGGTGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCATCTGAAGATGTTCTGAAGGAATTTGTTCTAGAAATAGAAATCATTACTACCTTGCATCACAAAAACATTATTTCCCTTCTTGGATTCTGCTTTGAGGATGGTAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATCCATGGTAACAAGAAAAATCCACCTGTGTTTGGTTGGACTGAGAGATACAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTCCATAACAATGAAGGCCAATCTGTGATCCATCGTGATGTAAAATCATCAAATGTTCTGTTATCTGAGGATTTTGAACCCCAGCTATCTGACTTTGGACTTGCAAAATGGGCATCAACCTCATCATCACATATAATCTGCACAGATGTTGCTGGAACCTTTGGTTACATGGCTCCTGAGTACTTCATGTATGGCAAAGTCAATGACAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTCCTTTCAGGGAGAAAGCCCATAAGTAGTGATTACCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAATCCAATTCTAAATAGTGGGAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCCTGAAGAAATGGAAAGGATGGTATTGGCAGCTACACTTTGTATCAGACGTGCTCCAAGAGCTAGACCTCAAATGAGCCTTATCAAAAAGGTCCTTGGAGGTGATGGTGAAGTGATGAAGTGGGCAAGACTAGAAGTGAATGCTGTGGAAGCAGCAGAAATGGGTGATGATGAAGCTTGTCCTCCACCTTCGAATCTGCAGTCACACCTTAACCTTGCTCTGCGTGATGTGGAGGATGACTCACTCTCCATGTGCAGTGTTGAGCAAAACATCTCATTGGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCAAGCTTTGATTGA 2217 0.4371 MKMLPTSTAGEASHGGRTVVVGVKMDSHSTELLTWALFKVAQPCDVVLALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCNLKQVDLKFKICRGSSVRRILVREANAYSATHIIVGSPQGLHRIRPYISVARYCAKKLPRDCCVLAVNNGKIVFKRDGSPVTAADMKGVDQNHATGVPSSIHRTLGKTSKVQDDDGKGSGQFSDHSLAKAFLDSREFIEKKSCSVCSSNPALFGLCCNHSEEESCGNACDENPLAIVSVQANDSVSKPGWPLLHKTITSDRKCSERSLFRQISVVQWAMQLPSRNLSYAAHLEQNTNNCGPNKDQFLGLDSKSGALVPVDAEIGTPSVPEHNSRSIPKELDGLHERYSSSCRLFKYQELVLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSEDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENIHGNKKNPPVFGWTERYKVAMGVAEALEYLHNNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWANPILNSGKVLQLLDPSLGDNYDPEEMERMVLAATLCIRRAPRARPQMSLIKKVLGGDGEVMKWARLEVNAVEAAEMGDDEACPPPSNLQSHLNLALRDVEDDSLSMCSVEQNISLEDYLRGRWSRSSSFD 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01029 738 ProSiteProfiles Protein kinase domain profile. 391 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01029 738 CDD STKc_IRAK 397 662 - -
Viun8g01029 738 SUPERFAMILY Protein kinase-like (PK-like) 371 662 IPR011009 -
Viun8g01029 738 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 16 153 - -
Viun8g01029 738 Gene3D HUPs 16 154 IPR014729 -
Viun8g01029 738 Pfam Universal stress protein family 17 149 IPR006016 -
Viun8g01029 738 Pfam Protein kinase domain 395 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01029 738 ProSitePatterns Protein kinases ATP-binding region signature. 397 419 IPR017441 GO:0005524
Viun8g01029 738 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 152 - -
Viun8g01029 738 Gene3D Phosphorylase Kinase; domain 1 357 465 - -
Viun8g01029 738 SMART serkin_6 391 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01029 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Viun8g01029 738 PANTHER OS08G0249100 PROTEIN 234 670 IPR046958 -
Viun8g01029 738 CDD USP_Like 18 152 - -
Viun8g01029 738 Gene3D Transferase(Phosphotransferase) domain 1 466 671 - -
Viun8g01029 738 FunFam Putative receptor-like serine/threonine-protein kinase 466 678 - -
Viun8g01029 738 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 360 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01029 Viun-Chr8 11941707 11945696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01029 378 659 Trihelix Transcription Factor Family AT1G68690 46.341 4.02e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun8g01029 Pkinase 9.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01029 - - gmx:100305405 1086.25