Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01028 ATGACAAGTGTGCTTCTCCTCCAACGTGATTGTGTATTGATGAAGCTGTTGCTAATGCTTATTCTTATCAGAAGTGGCAGTGCTCATAACGAGTGCCATGAGAATTTGTCTTGTGGACCGGACGAACCCCTTATTAGATTTCCCTTCCAACTGATGAAGGAGATGGAGGAACCATGCACTTATCCCCGTCTTTGTCTTTCTTGTACTGAAAAAAATGTGACCCATCTTGTGCATTCTACGATTAAACTCCAAGTCACTGATATAGACTACCAAAACCAGGAAATTAGGTTAACTGACCCGGAAAACTGCTTTACCAACAAGTTTATGGAAGTCATCAATTTTATTCGAAGTTACCAATTAGAATCACCATATGATGGACCAGAAAACAACTTGATCTTCTTCAACTGTACTTCAGCGGGGCTTCCATACCTCAGAAACAACTACATGCGACAAGATATGGTCTCCTGTCCTATTTACATGGCTAATTCTTTTGAAAGTGTCCTCAGATTGGATCTAACATCCTGTACCAAGATGTTCAATATCACTGCACCAATCGCGGCCGTCCACTGGAATTTATTGATTTTGAGATGGACTAAACCAAATTGTGCTGAGTGCGAAGCAAAAGGCAAGAGATGTAAATGGAAGACCAATAAAGACACACAAGGAGACATTGAATGTCTTGAATGCAAACGGAAGGGAATTCACGTTCCTAAATCTTTTATTTTTGCTACTACAGGTTCCATCTTTTTGGGGCTGCTGGTCATTGCTGTCTTTAAGGGCATTCTCTATTTTAGGAAAAAGCAAGAAGACCAAGAAAGGGTGGACAAGTTCTTAGAGGATTACAGAGCAGAAAAGCCTGCAAGATTCACCTATGCTGACCTTAAAAGAATCACCAATGGCTTTAAGGAAAACCTCGGAGAAGGAGCTCATGGGGCTGTCTTCAGAGGAAAACTTTCGAGTGAGATTCAAGTGGCTGTGAAGATCCTCAACAATACAGATGTTGAAGGGAAAGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATCCATCACATCAACGTGGTGCGTTTGCTCGGCTTCTGTGCAGAAGGATTCCATCGTGCTCTTGTCTACAATTTCTTTCCAAACGGTTCCTTACAGAGCTTCATATTTCCACCAGAAGACAAGGACCATTTCCTTGGTTGGGAGAAGCTTCAACACATTTCTCTCGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGCAACCATCCCATTATTCACTTTGACATCAATCCTCACAACGTGTTACTTGACGACAACTTCACTCCAAAAATATCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCCAGCGTGGTGTCAATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCTGAAGTCTTCTCCAGAAACTTTGGGAACGTGTCTTACAAATCTGATATTTACAGTTATGGAATGTTGTTGTTAGAAATGGTCGGTGGGAGGAAGAATGTGGACATGTCTTCTCCAGAAGATTTCCATGTTTTGTACCCAGATTGGATCCATAACCTGGTTGATGGAGATGTGCATATCCATGTTGAGGATGAAGATGATGTTAAGATTGCAAAGAAACTAGCAATTATTGGGCTTTGGTGCATTCAGTGGCAGCCAGGGAACCGTCCATCCATAAAATCTGTGATACACATGCTAGAAACTCAAGAGGAAAACCAGATTGCTGTGCCTCCTAATCCATTTCACTCAGCAACTTCCACTACAGTTAAGGGACCCACCTCCACAAGACGACCTTTGCATTTGGAAGTGATTGAAGAATGA 1827 0.4193 MTSVLLLQRDCVLMKLLLMLILIRSGSAHNECHENLSCGPDEPLIRFPFQLMKEMEEPCTYPRLCLSCTEKNVTHLVHSTIKLQVTDIDYQNQEIRLTDPENCFTNKFMEVINFIRSYQLESPYDGPENNLIFFNCTSAGLPYLRNNYMRQDMVSCPIYMANSFESVLRLDLTSCTKMFNITAPIAAVHWNLLILRWTKPNCAECEAKGKRCKWKTNKDTQGDIECLECKRKGIHVPKSFIFATTGSIFLGLLVIAVFKGILYFRKKQEDQERVDKFLEDYRAEKPARFTYADLKRITNGFKENLGEGAHGAVFRGKLSSEIQVAVKILNNTDVEGKEFINEVGIMGKIHHINVVRLLGFCAEGFHRALVYNFFPNGSLQSFIFPPEDKDHFLGWEKLQHISLGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSVVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSPEDFHVLYPDWIHNLVDGDVHIHVEDEDDVKIAKKLAIIGLWCIQWQPGNRPSIKSVIHMLETQEENQIAVPPNPFHSATSTTVKGPTSTRRPLHLEVIEE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01028 608 Pfam Wall-associated receptor kinase galacturonan-binding 32 99 IPR025287 GO:0030247
Viun8g01028 608 PANTHER RUST RESISTANCE KINASE LR10-RELATED 271 586 IPR045874 GO:0004672
Viun8g01028 608 SUPERFAMILY Protein kinase-like (PK-like) 281 571 IPR011009 -
Viun8g01028 608 Gene3D Phosphorylase Kinase; domain 1 271 373 - -
Viun8g01028 608 MobiDBLite consensus disorder prediction 579 599 - -
Viun8g01028 608 Pfam Protein tyrosine and serine/threonine kinase 301 568 IPR001245 GO:0004672|GO:0006468
Viun8g01028 608 FunFam PR5-like receptor kinase 374 579 - -
Viun8g01028 608 ProSiteProfiles Protein kinase domain profile. 299 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01028 608 Gene3D Transferase(Phosphotransferase) domain 1 374 581 - -
Viun8g01028 608 FunFam serine/threonine-protein kinase PBS1-like 265 373 - -
Viun8g01028 608 MobiDBLite consensus disorder prediction 579 596 - -
Viun8g01028 608 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01028 Viun-Chr8 11891717 11893963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01028 1 582 Receptor kinase-like Gene Family AT5G38260 33.386 8.13e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01028 PK_Tyr_Ser-Thr 9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01028 - - gmx:100813645 909.442