Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01027 ATGAGCTTGGGTTCTGCTGACAATAGAATTGTTGAAACAGAAAAGAGATTAGGCGTGAGCATGTGGATGGAGAGAGCATTGATAGTGTTGGTGCTTCTACTCCACGTCCACCAAATTGACGGAGGAGATGGTTGCCTCGCCTCTTCCTGCGGCAAAATCAGAAACATATCTTATCCATTCCGATTGAAAGGAGATCCAGAAGGGTGCGGTCTCCGCGAGTACGAGCTATCTTGTGAAAACAATACAACGCTGTTATCTTTGCTCTCGGGAACGTTTCATGTGAAGGCCATCAACTACAATAATTTCACAATTCGAGTTGTGGATCCTGGACTTCAACAACCGAACTGCTCCTCTCTTCCTCGCTATTTCTTGTCTCAATCCAATTTCACTGATTCTTACGCCAACGTCTTGAATCCCTACCAAACAAGTTATGCGAAGTTTGTTAACGAGTATATAGTGTTTTTGAGTTGTAGCCATGGAGTGAGTGGGAAGCGAAAGTACGTGGATACTGGTGGATGCCTGAATTGGGACTCCAAAGGTTACACATACGCTATGGCTGGTGACCTATTAGCAGAGGACTTAGAAGTTGGTTGTGATGTAAAGCTGGTTGCTCCCACATCGTGGTGGGGTTTCGACACAAATAATTATTCCTACGCCATGATCCACACAGCGCTACTCTATGGATTTCAGCTTTCGTGGATTTCTCTCGTCTGTGAGGGTCGTTGTGCACGCACTGGCTTATGCTATTTCATTGACAGCAGCCAGACGGTTGAATGCTTCCCCGGTGAAGTTAAACCTTCGGGACTGCTGTATTTTTTACAGATGACTATTGTTAATATCATACAAGGATTACTTATAGCAATACACAGACCAAACGAATATGTACCAATTCAATTCACTATATATCCACCTGAGGATATATATGGATTAATTATGTTGGGACAATATGGTATACCATACTCCATAGCTAGATATGTTATTGGCACGATCTTGTTTATTGTTCTATTGATATACAAGTGGAAAAGAAGACATTCCTCCGCATATGAAAATATTGAAAATTATTTAGAGCAAAATAGTTTGATGCCTATTCGATACTCATATAAGCAAATTGAGAAGATGACCAAAAGTTTCAGTGAAAAATTGGGTGAAGGAGGCTATGGCTCTGTATTTAAGGGAAAGTTACGTAGTGGACCTTGTGTTGCCATAAAAGTGTTACAAAAATCAAAAGGTAATGGACAAGACTTTATCAATGAAGTTGCAACAATTGGAAGAATACATCATCAAAATATAGTGAATTTAATAGGATATTGTGTTGAGGGCTCAAAACGTGCTCTTATTTATGAGTTCATGCCAAATGGATCTCTTGAAAAATTTATATTTTCCAGAGAAGGAAATCAACATTTATCCTATGACACAATATATAATATAGCAATTGGAGTAGCTCGTGGAATTTCTTATCTACATCATGGATGTGAGATGCATATTTTGCATTTTGACATTAAACCTCAGAACATCCTCCTTGATGAAAAATTCACCCCAAAGATCTCTGACTTCGGATTGGCAAAATTATATCCAACAGACAAAAGTGTTGTGACTATGACAGCAGCAAGAGGGACAATTGGGTACATGGCTCCAGAATTGTTTTATAGAAATGTTGGAAGAATATCAGATAAGTCTGATGTTTATAGCTTTGGAATGCTTCTAATGGAGATAGCAAGCAATAGAAAAAACCTAAACCCTCATGCAGAGCATTCAAGTCAACTTTACTTTCCCTTTTGGGTTTATGATCAACTTGATAAAGGTAAAGATATAGAAATGGAAGATGTCATAGAGAATGAGAACAAAATTACTAAAAAGATGATCATAGTTTCACTTTGGTGTATACAATTGAAACCAAATAATCGTCCTTCTATGAATAAAGTAATCGAAATGCTTGAAGGAGACATTGAAAACCTACAAATACCTCCAAAACCTTCTTTGTATCCACATGAAACATTCAAAGATAGTCAAAGAATCTGCTCCGACTTCATTAGTTCTTCAAGTTTTTCCATGGAGATGGCTACTAATGCTCCACTAAATGAAAGTATTTGA 2091 0.3816 MSLGSADNRIVETEKRLGVSMWMERALIVLVLLLHVHQIDGGDGCLASSCGKIRNISYPFRLKGDPEGCGLREYELSCENNTTLLSLLSGTFHVKAINYNNFTIRVVDPGLQQPNCSSLPRYFLSQSNFTDSYANVLNPYQTSYAKFVNEYIVFLSCSHGVSGKRKYVDTGGCLNWDSKGYTYAMAGDLLAEDLEVGCDVKLVAPTSWWGFDTNNYSYAMIHTALLYGFQLSWISLVCEGRCARTGLCYFIDSSQTVECFPGEVKPSGLLYFLQMTIVNIIQGLLIAIHRPNEYVPIQFTIYPPEDIYGLIMLGQYGIPYSIARYVIGTILFIVLLIYKWKRRHSSAYENIENYLEQNSLMPIRYSYKQIEKMTKSFSEKLGEGGYGSVFKGKLRSGPCVAIKVLQKSKGNGQDFINEVATIGRIHHQNIVNLIGYCVEGSKRALIYEFMPNGSLEKFIFSREGNQHLSYDTIYNIAIGVARGISYLHHGCEMHILHFDIKPQNILLDEKFTPKISDFGLAKLYPTDKSVVTMTAARGTIGYMAPELFYRNVGRISDKSDVYSFGMLLMEIASNRKNLNPHAEHSSQLYFPFWVYDQLDKGKDIEMEDVIENENKITKKMIIVSLWCIQLKPNNRPSMNKVIEMLEGDIENLQIPPKPSLYPHETFKDSQRICSDFISSSSFSMEMATNAPLNESI 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01027 696 Gene3D Phosphorylase Kinase; domain 1 349 449 - -
Viun8g01027 696 SUPERFAMILY Protein kinase-like (PK-like) 359 646 IPR011009 -
Viun8g01027 696 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Viun8g01027 696 FunFam PR5-like receptor kinase 450 657 - -
Viun8g01027 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Viun8g01027 696 PANTHER RUST RESISTANCE KINASE LR10-RELATED 348 665 IPR045874 GO:0004672
Viun8g01027 696 CDD STKc_IRAK 381 647 - -
Viun8g01027 696 ProSiteProfiles Protein kinase domain profile. 375 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01027 696 Gene3D Transferase(Phosphotransferase) domain 1 450 660 - -
Viun8g01027 696 Pfam Protein tyrosine and serine/threonine kinase 377 645 IPR001245 GO:0004672|GO:0006468
Viun8g01027 696 Pfam Wall-associated receptor kinase galacturonan-binding 45 108 IPR025287 GO:0030247
Viun8g01027 696 FunFam serine/threonine-protein kinase PBS1-like 343 449 - -
Viun8g01027 696 SMART serkin_6 375 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01027 Viun-Chr8 11863070 11887644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01027 50 661 Receptor kinase-like Gene Family AT5G38260 36.349 1.57e-120 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01027 PK_Tyr_Ser-Thr 9.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01027 - - gmx:100305367 857.44