Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01025 ATGGATCAACACCACTTCCTCCACCACCACTACCACCACCCTCAGGACCACCGCACCACCCGCTACACTTCCCTTAACCCTCAATCGCATCACCACCACCACCACCATAGCAACCTCCCACCGCCGCCGCCAGCGCCGCCGCCGCCTCTCTCCTACCACCGCACCCTCCACGCGGCTCCCCTGTCGCAACCCTACACCCCTTCCACTCCCCAACCCCAACAGCAGCAGCAGCAGCAATTCTCTTTCAACCACCACACATCTCTCCCCCACCGCACCCTCGAAGACGATTCACGTTCTCTCACCTACGACCTCCTTCCTCGCCGCACCACCGCCATCCCCTGGAACCCTAACCCTAGAACTGATGATTTCGATCGCGAATTCCACCACCACCACCACCGCCCTCCCCCGCCGCCGCCTCCCCCGATCGAAACCCTCCGCTATGACCCTGGGCGCCGTGACCGCCTCGTGGTGGATGCCTACGAGCAAAACCCCAGGGAGGCGCTCGCGTGGGGCGGCGGTGACTACCACGCGCCTAGCCAGGGCGACGTAGAGCCAGCACCCTACGTGCGCGTGTACAGCGTGGAATGTGACACTGACGTGGCCGGTAGAGGGTCCCGGGTGGAGAGCAAGAGGTGGGTGATGAGTGATAGAGAGAGGGAGAGGGAGAGGGGAAGAGAGTTGCACGAGTCTTCTTCTAATTTAGTTAGCAAGGGTAGTAACAGTGACAAATATTATCATGGTTCTGATAATGTGGATAGGTATAGTAGAGGGAATAGTAGAGAGCGTGGTCATGAATTCGCACGTACTCCTCCTAAGAAACAGGTGCAGAAGAAGAGCGCGCTTCTTAGGATTCAGACTGTTAAACCTAATCATAGGAACCGTGAGGTTGAGCAGTTACGGTACCCCGGTTATGGACCTGAAGGTAGCAATGGCTTTTTCAGGGGAAAGGAGCCATATTTGGCTCATGGGGTGAAGGGGGAAGAGAGAGAAGGGAGCCCTGTTGAGATTGATATCTCGTTTGAGTCCAATTCTCTGGTGGCCAAGGCTATTGTTGCGCCGCCTTCGAGTTCAGTGTCTGTTCCTGATTTGAATGTGACGCCGGTTTTAGATTCGGATTTGGGTTCTGGGGAGAAGAATAAAAGGGTTTCGGGCTCTGATGGCTATTACTCTGGTTTGCAGCAGCCGTATAGAATGTCTTCCGTTGTGGTTGTGGATTTAAATAGGTCGCCTTGCAAAGGGAATGATAGGTCTGGTTTGAGGAAGGAGGTTAATGTGCGGAAGAGTGTTAAGAATAGTTCTTCTCGGTCTCGCACCAGGGAGGCTGATGATTCTCGTGGGAAAAATGCGGTGCCAAATTCAGTTAAAGCTGGCAATGTCTGTTCTGGTAAATCGACCATAACGGTTGTCAAGAAGAAGAGAATTGTTAAGAGAATGGTGAAGAGGAAAGCTTGTTTAAACTCTATGACATCTGTGCCGAATTCACTGCCGGCAGAAAGGCTTCCTGGAACCGTGGAAGTCGAGAGTGCTGCACTGGTTTCGTCAACGGCCTCTAATCCTGAGAAAATTGAAGCTAATTCAGATGAGAAAAGCAACATCGTTGAGGAAGTGCCAGACTGTTTACATTCTTTGCCAAAGGAAGGTAATGTATTGAAAGAAGATAAAGAGGGAGGTTTACCGCAGCTGAGTTTGGGGCCAGATTCCACATCGCAAGATTGTGAGAGTGACAAAGATTCTGATAATAGGGAAGTATCCAGGTTTGAAATTGAAAGAGATGGAAACATTTCAAAATTTCCATCTCGTGCTTCTAGTAGTGAAGATAAGAAGAGTGATTCAGGTTGTTTAGATGTTAATAATGATGTCTTTGATAATGGAAATATTATTTTTATGCATGATAATGCAAATACTTCCGATTGTTTAGGTGCAAATAATTCTGTTCCAGGTACTGACACGGTTACTGAATTCTTAAGTGGGAGTACTATTTCTGAAGTCAATCACATGGATTATGGTAATAAGCAATTAAGTCAGAATGAAGGGTCTCTATCAGTTGGGAATTATTCAAATGTACAATCCCCACTGAATAACAATCTTGTAGATGCAGGGGATGAAATATTAAAAACCAGCGATACTTTTTCGAGTTCAAGAAAAATTAGGATTCAAGATGGTCTAGATTGCCTACAACATTCCAGTGCACTGAAGCAAGGCTCTGATAATGGATCATCTAATTTAGAAGATTGTATTGTTCACGGCTCTGGTATCATGCATGATGCTGGGAACCAATTGGCCCATGGTGATGTCACCATGCACCCTGAGAATTGTGAGACAGAAAAAACATTCCCAGATTCTAATATTTTAGCTGGATCTGGTGAAGGGAACACAAAGAAGATAAAAAAGAGAAAAGCTAGAACACAATTAAATATTTTGAGTTCAGAGATGGAGTCCTTATCTCCAGATCATGTAAATCCTGTTAGCCTTGCTAATAATGTGGATGGAGGCACGGGTCTAATGTCGAAAGATCCATCTGCTTCTATAGTTTTAGATCAGTCTGTTCAAAACGATGTTGACTCAATAACTGGTTTGGATGGGGTTACTGCTTTACATGAGGAAGGGGAGTTTTTAGAGACTCAGTTTTATGCTGCAAATAACAACAATGATGATGCAAATGAGGTTTCACCATCTTCTAAAAGGAAAAAAGTCACAGCTAACCCAAATTTCACTCAATGTCAATCAGAAATCAGTGCTGTTATTGTGGTTACCACCACATCTGATGTGGAAACTCCAGTCAATCTCAATGATAACCAAGAACATCAGAAAGAATTTGCTTTGTCAAGCATGGGTATGTGCATACCGTCTTCTGTTCAGTCAATGCCTTATTCAGAGAGTATTACCAAAATGTCTGACAATATTTTTAGTGGAGGATCTTTTGACTCTACTGATGCAAATAGGGAAACCATGAGTTCCGAGTATTCGGAATTACAACACTCAGACATAGTCTCTTTTTCACCATGTGAGGACTTGGCATTTCAAAACGATCACTTCTCACCATTGGAAGGTGAGTGCAAAGAAAACATTACTCCGGTTGTGCTTGTGAGTAATACTCAAATTGGTGTTTTAGGTGTTGGAAATACATTGGGAGAAAAGACTGATTTACAGGCCGTTAAGGGAAATTATCAATATAGAGACTTTGTGCAAAGGTCACCAAGACCTGACATGGAACCTAATGATCTCAATGTTAAGAATGATTTGCTTGCTCAGCAGAACCTTATGTCCTGTCCAACTAGTGGTGATGAAGTCACTACAAGTAATTCGAATGACGAATTCATTGTGGATGCACCTGGCGCATTATCAGATATCTTTTCTCAAGGGATGGCATCTGAAGTACCGGATAGAAGGTCTTTAGAATTCACAGCTATCAATGATGAAAATATTTGTGGGGTTGAAGAAAATACTTCGTCGGTACATCAGACGATACAGAATAGTAGGTCAGATAGTGCATTTGGACACAGTAATATGATAACAAAGAAAACAATTTCAGAACCATCCCAAGTTTCTTCCAAAGTTACAACTCAGGCTCTAAATTCATATCGTTTTGGGTTGAGTGGGACCAAAAATCAGTCAGGTAGTGTCATTCCCAAAACTTTTCCAGGTCATTCTTTTACCTTTTTGAAGTCGGAGACGAAGACATCTGCCTCTTCAACTCATGTGTCAAAGCCTCGAACTTGGCATCGGACAGGTAATAATCCCCCTATTTCTGTACCTAGAATCAATTCAGTAAGAACAGTTCCTCCCAAAAGGCCAATTCTGGAAAGGAAAGGGAACTTTCAAAATACCTCGTATGTTCGTAAAGGAAACAGTCTTGTAAGGAAACCTACCCCAGTTCCTGCTCTACCTCAAATCTCCTCTGTTAATAAGTCATCTTCTTCGGGCTTTGGTGAAATATCAAAAAGCACTAAATCTGAAAGCAGGGCTGACGTGACAGATCAACCAATGTACCTGAGAGCAGGAGCAACATATTCTCAGCAGAGGCAGAGGCAGAGAACACCTCCACTACCAATTGACACCAAATCAGAGGAAAATACATCTTCCTCATTGGTAGAACCTTCTGGTGGTTCCTGTGAAAATGTATCTGATCCTAAAACATTTATAGAAATTAATAATAATGCACAGAACTCTTCTGAAGATGCACTGAAGCATTGTGAAATTCTAGAAAACCAACCTGTTCCATCCGATAATGGGGAGAGTCAAGTTGAAGTAAACGAAGGCAATCCTCTTTCTTTGAATACGAAGAGAATAGTATATATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCGTGTGATGTGTCTGTCTCCACTGATGACAATGGCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAATTGGTTAGGACTACATTTGAAAGCCACACCAACCAAACTGCTGTAGTGCCTAATGGCATGGCAAATTCTGATGGACAAGGAACTAGTAATGCTCTTTGCAATACGAGGTTTAGTAAGAAGCGGTTACATAAGGCTGTCAGGAGTTCATGCAAACGTTCAAGAGCCTCACTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAACATGACAGGAATTCACGTCATAATCAAAAGGTTTTACCTCAATTGTTTCGATGGAAAAGAGCAACATTTGCTTCAAGCTTCAACAGCAGTTCCGTATCTGCAATCAGCAAAAAATTGCTTCAATTGAGAAAGAGGGATACTGTTTACACTAGGTCAAAACATGGGTTTTCACTTTGGAAATCCAGGGTTTTAGGTGTTGGTGGTTGCAGTTTGAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCTGTAGAGAGGAAGAAGAGAGAGCAGAAAAATGCGGTTTGCATCAGTTCTCAGTCAAAGAGAGAGCGTATATTTCGTATTGGCTCAGTTCGTTACAGAATGGATCCCTCCAGGAGGACACTCCAGAGGATTTCAGTCGATGAATCCCAGTCCTCAGGATCTACCAGTTCAGGTTTGGCTTCCAAAAGTGCTTACATTCCAAGGAGATTAGTGATTGGAAACGATGAATATGTACGAATTGGAAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACAGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACCAGATTTGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCTTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTAACGCACCAGGTTATTCCAGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGTTTATGCTCAAACAGTAATTGTCCTTATAGACATGTCAATGTGAACCCCAATGCATCTATTTGTGAAGGATTTCTCAGGGGATATTGTGCTGATGGAAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAAGCTGTACTGAAGGATCCAAATGCAAACTTCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAACAAGACCAGAGGACGTTATTTTGGTTCTATTCCTGCAGCTGATGTTTCTGAATCTGGGATGATGGTTGCTCCAAACCGGCATAAACAAAGTAGTGAAATTGAAGAGGAACTGTCTGACTACATCAGCCTTGATGTTATGAGTGAAGAAGTGGCAGACACCGATGATCTATCATTTGATCCAGCAGAGTTGTGTGAGAATGACTCCTTGGATGATCTTGATGAACTCATTAAACCAGTTCTTTTATTGAAAACAAAGTTCACATCACAATCACCTGACTCATATCTTCCACGCAAGTGGTGGAGACTTAGGTCCTTTGTTAATGAGGTAATTTAG 6012 0.4331 MDQHHFLHHHYHHPQDHRTTRYTSLNPQSHHHHHHHSNLPPPPPAPPPPLSYHRTLHAAPLSQPYTPSTPQPQQQQQQQFSFNHHTSLPHRTLEDDSRSLTYDLLPRRTTAIPWNPNPRTDDFDREFHHHHHRPPPPPPPPIETLRYDPGRRDRLVVDAYEQNPREALAWGGGDYHAPSQGDVEPAPYVRVYSVECDTDVAGRGSRVESKRWVMSDRERERERGRELHESSSNLVSKGSNSDKYYHGSDNVDRYSRGNSRERGHEFARTPPKKQVQKKSALLRIQTVKPNHRNREVEQLRYPGYGPEGSNGFFRGKEPYLAHGVKGEEREGSPVEIDISFESNSLVAKAIVAPPSSSVSVPDLNVTPVLDSDLGSGEKNKRVSGSDGYYSGLQQPYRMSSVVVVDLNRSPCKGNDRSGLRKEVNVRKSVKNSSSRSRTREADDSRGKNAVPNSVKAGNVCSGKSTITVVKKKRIVKRMVKRKACLNSMTSVPNSLPAERLPGTVEVESAALVSSTASNPEKIEANSDEKSNIVEEVPDCLHSLPKEGNVLKEDKEGGLPQLSLGPDSTSQDCESDKDSDNREVSRFEIERDGNISKFPSRASSSEDKKSDSGCLDVNNDVFDNGNIIFMHDNANTSDCLGANNSVPGTDTVTEFLSGSTISEVNHMDYGNKQLSQNEGSLSVGNYSNVQSPLNNNLVDAGDEILKTSDTFSSSRKIRIQDGLDCLQHSSALKQGSDNGSSNLEDCIVHGSGIMHDAGNQLAHGDVTMHPENCETEKTFPDSNILAGSGEGNTKKIKKRKARTQLNILSSEMESLSPDHVNPVSLANNVDGGTGLMSKDPSASIVLDQSVQNDVDSITGLDGVTALHEEGEFLETQFYAANNNNDDANEVSPSSKRKKVTANPNFTQCQSEISAVIVVTTTSDVETPVNLNDNQEHQKEFALSSMGMCIPSSVQSMPYSESITKMSDNIFSGGSFDSTDANRETMSSEYSELQHSDIVSFSPCEDLAFQNDHFSPLEGECKENITPVVLVSNTQIGVLGVGNTLGEKTDLQAVKGNYQYRDFVQRSPRPDMEPNDLNVKNDLLAQQNLMSCPTSGDEVTTSNSNDEFIVDAPGALSDIFSQGMASEVPDRRSLEFTAINDENICGVEENTSSVHQTIQNSRSDSAFGHSNMITKKTISEPSQVSSKVTTQALNSYRFGLSGTKNQSGSVIPKTFPGHSFTFLKSETKTSASSTHVSKPRTWHRTGNNPPISVPRINSVRTVPPKRPILERKGNFQNTSYVRKGNSLVRKPTPVPALPQISSVNKSSSSGFGEISKSTKSESRADVTDQPMYLRAGATYSQQRQRQRTPPLPIDTKSEENTSSSLVEPSGGSCENVSDPKTFIEINNNAQNSSEDALKHCEILENQPVPSDNGESQVEVNEGNPLSLNTKRIVYIKPKTNQLVATSNSCDVSVSTDDNGQTAFSDGYYKRRKNQLVRTTFESHTNQTAVVPNGMANSDGQGTSNALCNTRFSKKRLHKAVRSSCKRSRASLVWTLCSKNSSEHDRNSRHNQKVLPQLFRWKRATFASSFNSSSVSAISKKLLQLRKRDTVYTRSKHGFSLWKSRVLGVGGCSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKNAVCISSQSKRERIFRIGSVRYRMDPSRRTLQRISVDESQSSGSTSSGLASKSAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHQVIPERMPDCSYFLQGLCSNSNCPYRHVNVNPNASICEGFLRGYCADGNECRKKHSYVCPTFEATGSCTEGSKCKLHHPKKQSKGKKRKRSGDQNKTRGRYFGSIPAADVSESGMMVAPNRHKQSSEIEEELSDYISLDVMSEEVADTDDLSFDPAELCENDSLDDLDELIKPVLLLKTKFTSQSPDSYLPRKWWRLRSFVNEVI 2003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01025 2003 MobiDBLite consensus disorder prediction 409 456 - -
Viun8g01025 2003 Coils Coil 1384 1404 - -
Viun8g01025 2003 Gene3D - 1829 1892 - -
Viun8g01025 2003 PANTHER CCCH ZINGC FINGER 261 1976 - -
Viun8g01025 2003 SMART c3hfinal6 1776 1800 IPR000571 GO:0046872
Viun8g01025 2003 SMART c3hfinal6 1802 1827 IPR000571 GO:0046872
Viun8g01025 2003 SMART c3hfinal6 1747 1775 IPR000571 GO:0046872
Viun8g01025 2003 SMART c3hfinal6 1829 1855 IPR000571 GO:0046872
Viun8g01025 2003 SMART c3hfinal6 1856 1878 IPR000571 GO:0046872
Viun8g01025 2003 Gene3D - 1774 1828 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 414 446 - -
Viun8g01025 2003 FunFam Zinc finger CCCH domain-containing protein 7 1830 1891 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 1332 1376 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 356 389 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 775 794 - -
Viun8g01025 2003 SUPERFAMILY beta-sandwich domain of Sec23/24 32 146 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 1295 1315 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 1865 1898 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 246 272 - -
Viun8g01025 2003 ProSiteProfiles Zinc finger C3H1-type profile. 1802 1828 IPR000571 GO:0046872
Viun8g01025 2003 MobiDBLite consensus disorder prediction 203 230 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 550 614 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 61 80 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 1229 1253 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 1271 1376 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 511 530 - -
Viun8g01025 2003 ProSiteProfiles Zinc finger C3H1-type profile. 1747 1776 IPR000571 GO:0046872
Viun8g01025 2003 ProSiteProfiles Zinc finger C3H1-type profile. 1829 1856 IPR000571 GO:0046872
Viun8g01025 2003 MobiDBLite consensus disorder prediction 203 278 - -
Viun8g01025 2003 FunFam zinc finger CCCH domain-containing protein 3 1777 1828 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 39 53 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 113 147 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 1 80 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 119 133 - -
Viun8g01025 2003 Coils Coil 1625 1645 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 570 594 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 231 245 - -
Viun8g01025 2003 MobiDBLite consensus disorder prediction 1875 1892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01025 Viun-Chr8 11739372 11748554 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun8g01025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01025 - - vun:114193719 3780.33