Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01023 ATGGATCAACACCACTTCCTCCACCACCACTACCACCACCCTCAGGACCACCGCACCACCCGCTACACTTCCCTTAACCCTCAATCGCATCACCACCACCACCACCATAGCAACCTCCCACCGCCGCCGCCAGCGCCGCCGCCGCCTCTCTCCTACCACCGCACCCTCCACGCGGCTCCCCTGTCGCAACCCTACACCCCTTCCACTCCCCAACCCCAACAGCAGCAGCAGCAGCAATTCTCTTTCAACCACCACACATCTCTCCCCCACCGCACCCTCGAAGACGATTCACGTTCTCTCACCTACGACCTCCTTCCTCGCCGCACCACCGCCATCCCCTGGAACCCTAACCCTAGAACTGATGATTTCGATCGCGAATTCCACCACCACCACCACCGCCCTCCCCCGCCGCCGCCTCCCCCGATCGAAACCCTCCGCTATGACCCTGGGCGCCGTGACCGCCTCGTGGTGGATGCCTACGAGCAAAACCCCAGGGAGGCGCTCGCGTGGGGCGGCGGTGACTACCACGCGCCTAGCCAGGGCGACGTAGAGCCAGCACCCTACGTGCGCGTGTACAGCGTGGAATGTGACACTGACGTGGCCGGTAGAGGGTCCCGGGTGGAGAGCAAGAGGTGGGTGATGAGTGATAGAGAGAGGGAGAGGGAGAGGGGAAGAGAGTTGCACGAGTCTTCTTCTAATTTAGTTAGCAAGGGTAGTAACAGTGACAAATATTATCATGGTTCTGATAATGTGGATAGGTATAGTAGAGGGAATAGTAGAGAGCGTGGTCATGAATTCGCACGTACTCCTCCTAAGAAACAGGTGCAGAAGAAGAGCGCGCTTCTTAGGATTCAGACTGTTAAACCTAATCATAGGAACCGTGAGGTTGAGCAGTTACGGTACCCCGGTTATGGACCTGAAGGTAGCAATGGCTTTTTCAGGGGAAAGGAGCCATATTTGGCTCATGGGGTGAAGGGGGAAGAGAGAGAAGGGAGCCCTGTTGAGATTGATATCTCGTTTGAGTCCAATTCTCTGGTGGCCAAGGCTATTGTTGCGCCGCCTTCGAGTTCAGTGTCTGTTCCTGATTTGAATGTGACGCCGGTTTTAGATTCGGATTTGGGTTCTGGGGAGAAGAATAAAAGGGTTTCGGGCTCTGATGGCTATTACTCTGGTTTGCAGCAGCCGTATAGAATGTCTTCCGTTGTGGTTGTGGATTTAAATAGGTCGCCTTGCAAAGGGAATGATAGGTCTGGTTTGAGGAAGGAGGTTAATGTGCGGAAGAGTGTTAAGAATAGTTCTTCTCGGTCTCGCACCAGGGAGGCTGATGATTCTCGTGGGAAAAATGCGGTGCCAAATTCAGTTAAAGCTGGCAATGTCTGTTCTGGTAAATCGACCATAACGGTTGTCAAGAAGAAGAGAATTGTTAAGAGAATGGTGAAGAGGAAAGCTTGTTTAAACTCTATGACATCTGTGCCGAATTCACTGCCGGCAGAAAGGCTTCCTGGAACCGTGGAAGTCGAGAGTGCTGCACTGGTTTCGTCAACGGCCTCTAATCCTGAGAAAATTGAAGCTAATTCAGATGAGAAAAGCAACATCGTTGAGGAAGTGCCAGACTGTTTACATTCTTTGCCAAAGGAAGGTAATGTATTGAAAGAAGATAAAGAGGGAGGTTTACCGCAGCTGAGTTTGGGGCCAGATTCCACATCGCAAGATTGTGAGAGTGACAAAGATTCTGATAATAGGGAAGTATCCAGGTTTGAAATTGAAAGAGATGGAAACATTTCAAAATTTCCATCTCGTGCTTCTAGTAGTGAAGATAAGAAGAGTGATTCAGGTTGTTTAGATGTTAATAATGATGTCTTTGATAATGGAAATATTATTTTTATGCATGATAATGCAAATACTTCCGATTGTTTAGGTGCAAATAATTCTGTTCCAGGTACTGACACGGTTACTGAATTCTTAAGTGGGAGTACTATTTCTGAAGTCAATCACATGGATTATGGTAATAAGCAATTAAGTCAGAATGAAGGGTCTCTATCAGTTGGGAATTATTCAAATGTACAATCCCCACTGAATAACAATCTTGTAGATGCAGGGGATGAAATATTAAAAACCAGCGATACTTTTTCGAGTTCAAGAAAAATTAGGATTCAAGATGGTCTAGATTGCCTACAACATTCCAGTGCACTGAAGCAAGGCTCTGATAATGGATCATCTAATTTAGAAGATTGTATTGTTCACGGCTCTGGTATCATGCATGATGCTGGGAACCAATTGGCCCATGGTGATGTCACCATGCACCCTGAGAATTGTGAGACAGAAAAAACATTCCCAGATTCTAATATTTTAGCTGGATCTGGTGAAGGGAACACAAAGAAGATAAAAAAGAGAAAAGCTAGAACACAATTAAATATTTTGAGTTCAGAGATGGAGTCCTTATCTCCAGATCATGTAAATCCTGTTAGCCTTGCTAATAATGTGGATGGAGGCACGGGTCTAATGTCGAAAGATCCATCTGCTTCTATAGTTTTAGATCAGTCTGTTCAAAACGATGTTGACTCAATAACTGGTTTGGATGGGGTTACTGCTTTACATGAGGAAGGGGAGTTTTTAGAGACTCAGTTTTATGCTGCAAATAACAACAATGATGATGCAAATGAGGTTTCACCATCTTCTAAAAGGAAAAAAGTCACAGCTAACCCAAATTTCACTCAATGTCAATCAGAAATCAGTGCTGTTATTGTGGTTACCACCACATCTGATGTGGAAACTCCAGTCAATCTCAATGATAACCAAGAACATCAGAAAGAATTTGCTTTGTCAAGCATGGGTATGTGCATACCGTCTTCTGTTCAGTCAATGCCTTATTCAGAGAGTATTACCAAAATGTCTGACAATATTTTTAGTGGAGGATCTTTTGACTCTACTGATGCAAATAGGGAAACCATGAGTTCCGAGTATTCGGAATTACAACACTCAGACATAGTCTCTTTTTCACCATGTGAGGACTTGGCATTTCAAAACGATCACTTCTCACCATTGGAAGGTGAGTGCAAAGAAAACATTACTCCGGTTGTGCTTGTGAGTAATACTCAAATTGGTGTTTTAGGTGTTGGAAATACATTGGGAGAAAAGACTGATTTACAGGCCGTTAAGGGAAATTATCAATATAGAGACTTTGTGCAAAGGTCACCAAGACCTGACATGGAACCTAATGATCTCAATGTTAAGAATGATTTGCTTGCTCAGCAGAACCTTATGTCCTGTCCAACTAGTGGTGATGAAGTCACTACAAGTAATTCGAATGACGAATTCATTGTGGATGCACCTGGCGCATTATCAGATATCTTTTCTCAAGGGATGGCATCTGAAGTACCGGATAGAAGGTCTTTAGAATTCACAGCTATCAATGATGAAAATATTTGTGGGGTTGAAGAAAATACTTCGTCGGTACATCAGACGATACAGAATAGTAGGTCAGATAGTGCATTTGGACACAGTAATATGATAACAAAGAAAACAATTTCAGAACCATCCCAAGTTTCTTCCAAAGTTACAACTCAGGCTCTAAATTCATATCGTTTTGGGTTGAGTGGGACCAAAAATCAGTCAGGTAGTGTCATTCCCAAAACTTTTCCAGGTCATTCTTTTACCTTTTTGAAGTCGGAGACGAAGACATCTGCCTCTTCAACTCATGTGTCAAAGCCTCGAACTTGGCATCGGACAGGTAATAATCCCCCTATTTCTGTACCTAGAATCAATTCAGTAAGAACAGTTCCTCCCAAAAGGCCAATTCTGGAAAGGAAAGGGAACTTTCAAAATACCTCGTATGTTCGTAAAGGAAACAGTCTTGTAAGGAAACCTACCCCAGTTCCTGCTCTACCTCAAATCTCCTCTGTTAATAAGTCATCTTCTTCGGGCTTTGGTGAAATATCAAAAAGCACTAAATCTGAAAGCAGGGCTGACGTGACAGATCAACCAATGTACCTGAGAGCAGGAGCAACATATTCTCAGCAGAGGCAGAGGCAGAGAACACCTCCACTACCAATTGACACCAAATCAGAGGAAAATACATCTTCCTCATTGGTAGAACCTTCTGGTGGTTCCTGTGAAAATGTATCTGATCCTAAAACATTTATAGAAATTAATAATAATGCACAGAACTCTTCTGAAGATGCACTGAAGCATTGTGAAATTCTAGAAAACCAACCTGTTCCATCCGATAATGGGGAGAGTCAAGTTGAAGTAAACGAAGGCAATCCTCTTTCTTTGAATACGAAGAGAATAGTATATATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCGTGTGATGTGTCTGTCTCCACTGATGACAATGGCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAATTGGTTAGGACTACATTTGAAAGCCACACCAACCAAACTGCTGTAGTGCCTAATGGCATGGCAAATTCTGATGGACAAGGAACTAGTAATGCTCTTTGCAATACGAGGTTTAGTAAGAAGCGGTTACATAAGGCTGTCAGGAGTTCATGCAAACGTTCAAGAGCCTCACTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAACATGACAGGAATTCACGTCATAATCAAAAGGTTTTACCTCAATTGTTTCGATGGAAAAGAGCAACATTTGCTTCAAGCTTCAACAGCAGTTCCGTATCTGCAATCAGCAAAAAATTGCTTCAATTGAGAAAGAGGGATACTGTTTACACTAGGTCAAAACATGGGTTTTCACTTTGGAAATCCAGGGTTTTAGGTGTTGGTGGTTGCAGTTTGAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCTGTAGAGAGGAAGAAGAGAGAGCAGAAAAATGCGGTTTGCATCAGTTCTCAGTCAAAGATGGTTGAATGTGCAGGAGAGCGTATATTTCGTATTGGCTCAGTTCGTTACAGAATGGATCCCTCCAGGAGGACACTCCAGAGGATTTCAGTCGATGAATCCCAGTCCTCAGGATCTACCAGTTCAGGTTTGGCTTCCAAAAGTGCTTACATTCCAAGGAGATTAGTGATTGGAAACGATGAATATGTACGAATTGGAAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACAGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACCAGATTTGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCTTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTAACGCACCAGGTTATTCCAGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGTTTATGCTCAAACAGTAATTGTCCTTATAGACATGTCAATGTGAACCCCAATGCATCTATTTGTGAAGGATTTCTCAGGGGATATTGTGCTGATGGAAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAAGCTGTACTGAAGGATCCAAATGCAAACTTCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAACAAGACCAGAGGACGTTATTTTGGTTCTATTCCTGCAGCTGATGTTTCTGAATCTGGGATGATGGTTGCTCCAAACCGGCATAAACAAAGTAGTGAAATTGAAGAGGAACTGTCTGACTACATCAGCCTTGATGTTATGAGTGAAGAAGTGGCAGACACCGATGATCTATCATTTGATCCAGCAGAGTTGTGTGAGAATGACTCCTTGGATGATCTTGATGAACTCATTAAACCAGTTCTTTTATTGAAAACAAAGTTCACATCACAATCACCTGACTCATATCTTCCACGCAAGTGGTGGAGACTTAGGTCCTTTGTTAATGAGGTAATTTAG 6027 0.4332 MDQHHFLHHHYHHPQDHRTTRYTSLNPQSHHHHHHHSNLPPPPPAPPPPLSYHRTLHAAPLSQPYTPSTPQPQQQQQQQFSFNHHTSLPHRTLEDDSRSLTYDLLPRRTTAIPWNPNPRTDDFDREFHHHHHRPPPPPPPPIETLRYDPGRRDRLVVDAYEQNPREALAWGGGDYHAPSQGDVEPAPYVRVYSVECDTDVAGRGSRVESKRWVMSDRERERERGRELHESSSNLVSKGSNSDKYYHGSDNVDRYSRGNSRERGHEFARTPPKKQVQKKSALLRIQTVKPNHRNREVEQLRYPGYGPEGSNGFFRGKEPYLAHGVKGEEREGSPVEIDISFESNSLVAKAIVAPPSSSVSVPDLNVTPVLDSDLGSGEKNKRVSGSDGYYSGLQQPYRMSSVVVVDLNRSPCKGNDRSGLRKEVNVRKSVKNSSSRSRTREADDSRGKNAVPNSVKAGNVCSGKSTITVVKKKRIVKRMVKRKACLNSMTSVPNSLPAERLPGTVEVESAALVSSTASNPEKIEANSDEKSNIVEEVPDCLHSLPKEGNVLKEDKEGGLPQLSLGPDSTSQDCESDKDSDNREVSRFEIERDGNISKFPSRASSSEDKKSDSGCLDVNNDVFDNGNIIFMHDNANTSDCLGANNSVPGTDTVTEFLSGSTISEVNHMDYGNKQLSQNEGSLSVGNYSNVQSPLNNNLVDAGDEILKTSDTFSSSRKIRIQDGLDCLQHSSALKQGSDNGSSNLEDCIVHGSGIMHDAGNQLAHGDVTMHPENCETEKTFPDSNILAGSGEGNTKKIKKRKARTQLNILSSEMESLSPDHVNPVSLANNVDGGTGLMSKDPSASIVLDQSVQNDVDSITGLDGVTALHEEGEFLETQFYAANNNNDDANEVSPSSKRKKVTANPNFTQCQSEISAVIVVTTTSDVETPVNLNDNQEHQKEFALSSMGMCIPSSVQSMPYSESITKMSDNIFSGGSFDSTDANRETMSSEYSELQHSDIVSFSPCEDLAFQNDHFSPLEGECKENITPVVLVSNTQIGVLGVGNTLGEKTDLQAVKGNYQYRDFVQRSPRPDMEPNDLNVKNDLLAQQNLMSCPTSGDEVTTSNSNDEFIVDAPGALSDIFSQGMASEVPDRRSLEFTAINDENICGVEENTSSVHQTIQNSRSDSAFGHSNMITKKTISEPSQVSSKVTTQALNSYRFGLSGTKNQSGSVIPKTFPGHSFTFLKSETKTSASSTHVSKPRTWHRTGNNPPISVPRINSVRTVPPKRPILERKGNFQNTSYVRKGNSLVRKPTPVPALPQISSVNKSSSSGFGEISKSTKSESRADVTDQPMYLRAGATYSQQRQRQRTPPLPIDTKSEENTSSSLVEPSGGSCENVSDPKTFIEINNNAQNSSEDALKHCEILENQPVPSDNGESQVEVNEGNPLSLNTKRIVYIKPKTNQLVATSNSCDVSVSTDDNGQTAFSDGYYKRRKNQLVRTTFESHTNQTAVVPNGMANSDGQGTSNALCNTRFSKKRLHKAVRSSCKRSRASLVWTLCSKNSSEHDRNSRHNQKVLPQLFRWKRATFASSFNSSSVSAISKKLLQLRKRDTVYTRSKHGFSLWKSRVLGVGGCSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKNAVCISSQSKMVECAGERIFRIGSVRYRMDPSRRTLQRISVDESQSSGSTSSGLASKSAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHQVIPERMPDCSYFLQGLCSNSNCPYRHVNVNPNASICEGFLRGYCADGNECRKKHSYVCPTFEATGSCTEGSKCKLHHPKKQSKGKKRKRSGDQNKTRGRYFGSIPAADVSESGMMVAPNRHKQSSEIEEELSDYISLDVMSEEVADTDDLSFDPAELCENDSLDDLDELIKPVLLLKTKFTSQSPDSYLPRKWWRLRSFVNEVI 2008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01023 2008 Gene3D - 1834 1897 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 409 456 - -
Viun8g01023 2008 Coils Coil 1384 1404 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 414 446 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 1870 1902 - -
Viun8g01023 2008 ProSiteProfiles Zinc finger C3H1-type profile. 1752 1781 IPR000571 GO:0046872
Viun8g01023 2008 MobiDBLite consensus disorder prediction 1332 1376 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 356 389 - -
Viun8g01023 2008 FunFam Zinc finger CCCH domain-containing protein 7 1835 1896 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 775 794 - -
Viun8g01023 2008 SUPERFAMILY beta-sandwich domain of Sec23/24 32 146 - -
Viun8g01023 2008 Gene3D - 1779 1833 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 1295 1315 - -
Viun8g01023 2008 SMART c3hfinal6 1807 1832 IPR000571 GO:0046872
Viun8g01023 2008 SMART c3hfinal6 1781 1805 IPR000571 GO:0046872
Viun8g01023 2008 SMART c3hfinal6 1752 1780 IPR000571 GO:0046872
Viun8g01023 2008 SMART c3hfinal6 1861 1883 IPR000571 GO:0046872
Viun8g01023 2008 SMART c3hfinal6 1834 1860 IPR000571 GO:0046872
Viun8g01023 2008 MobiDBLite consensus disorder prediction 246 272 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 203 230 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 550 614 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 61 80 - -
Viun8g01023 2008 ProSiteProfiles Zinc finger C3H1-type profile. 1834 1861 IPR000571 GO:0046872
Viun8g01023 2008 MobiDBLite consensus disorder prediction 1880 1897 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 1229 1253 - -
Viun8g01023 2008 FunFam zinc finger CCCH domain-containing protein 3 1782 1833 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 1271 1376 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 511 530 - -
Viun8g01023 2008 ProSiteProfiles Zinc finger C3H1-type profile. 1807 1833 IPR000571 GO:0046872
Viun8g01023 2008 MobiDBLite consensus disorder prediction 203 278 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 39 53 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 113 147 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 1 80 - -
Viun8g01023 2008 PANTHER CCCH ZINGC FINGER 261 1981 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 119 133 - -
Viun8g01023 2008 Coils Coil 1625 1645 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 570 594 - -
Viun8g01023 2008 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01023 Viun-Chr8 11739372 11748555 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun8g01023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01023 - - vun:114193719 3793.82