Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01013 ATGTCTTCTACTGCTGGTAAAGTCATCAAGTGCAGAGCTGCCGTGGCATGGGAACCAGAGAAGCCACTGTCGATAGAGACGATAGAAGTGGCACCACCTGGGAAAGGAGAAGTGCGTTTGAAAATCCTCTTCAACTCCCTTTGCCGTACTGATGTTTACTGGTGGGATGTTAAGGGTCAGAATCCGCTGTTTCCTCGTATATTAGGTCATGAAGCTTCAGGGATTGTGGAGAGCGTGGGTGAGGGTGTGACCGATCTGAAACCAGGAGATCATGCACTCCCAATATTCACTGGGGAGTGTGGAGAATGCAAATATTGCAAATCAGAAGAGAGCAACCTCTGTGAGCTGCTAAGGATCAACAGTGACAGAGGAGTTATGCTCAGTGATGGCAAAACAAGGTTCTCCAAAAATGGACAACCCATTTACCACTTTCTTGGAACTTCCACATTCAGTGAATACACTGTTCTTCATGCTGGCTGTGTTGCCAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTGTTGTCAGTTGCGGATTTTGCACAGGTTTTGGTGCTACTGTCAATGTTGCAAAACCGAAGCCTAATGATACTGTTGCTGTCTTTGGTTTAGGAGCTGTTGGTCTTTCTGCCTGTGAGGGAGCAAGGGTTTCTGGTGCATCGAGAATCATTGGGGTTGATCTACTTTCCAGTCGATTTGAACAAGCCAAAAAATTTGGGGTCACTGACTTTGTGAACCCCAAAGAGCACAACAAACCAGTTCAACAGGTAATTGCTGAAATGACTGGTGGAGGAGTAGATCGTGCTGTTGAATGCACTGGAAGCATCCAAGCTTCGATCTCAGCATTTGAATGCACTCATGATGGTTGGGGTGTTGCTGTGCTTGTTAGTGTTCCACACAAGGATGCTGAATTCAAAACTCATCCCATGAAGTTCATGGAAGGAAGAACTCTGAAGGGTACCTTCTATGGCCACTTCAAACCCCGCACTGATATTCCTGGTGTTGTGGAGAAGTACCTCAACAAGGAGCTGGAACTGGAGAAACTTATCACTCACAGTGTGCCATTCTCAGAGATCAACACAGCATTTGATCTTATGCTGAAAGGGGAGGGAATAAGGTGTCTGATCCGCATGGAAGAGTGA 1143 0.4646 MSSTAGKVIKCRAAVAWEPEKPLSIETIEVAPPGKGEVRLKILFNSLCRTDVYWWDVKGQNPLFPRILGHEASGIVESVGEGVTDLKPGDHALPIFTGECGECKYCKSEESNLCELLRINSDRGVMLSDGKTRFSKNGQPIYHFLGTSTFSEYTVLHAGCVAKINPAAPLDKVCVVSCGFCTGFGATVNVAKPKPNDTVAVFGLGAVGLSACEGARVSGASRIIGVDLLSSRFEQAKKFGVTDFVNPKEHNKPVQQVIAEMTGGGVDRAVECTGSIQASISAFECTHDGWGVAVLVSVPHKDAEFKTHPMKFMEGRTLKGTFYGHFKPRTDIPGVVEKYLNKELELEKLITHSVPFSEINTAFDLMLKGEGIRCLIRMEE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01013 380 CDD alcohol_DH_plants 9 377 - -
Viun8g01013 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Viun8g01013 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Viun8g01013 380 Gene3D - 183 321 - -
Viun8g01013 380 Gene3D - 20 370 - -
Viun8g01013 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Viun8g01013 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Viun8g01013 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Viun8g01013 380 Pfam Zinc-binding dehydrogenase 206 334 IPR013149 -
Viun8g01013 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Viun8g01013 380 FunFam Alcohol dehydrogenase 6 14 196 - -
Viun8g01013 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01013 Viun-Chr8 11553087 11559027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01013 1 370 Monolignol Biosynthesis Gene Families AT1G72680 25.067 6.14e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01013 K18857 - gmx:100775490 705.671