Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01008 ATGCAAGCTGAGGATGGGACTAGCAATGGTGATAAGTGGGCTGGGTTGGGTAGGAGGTCAGATTCTGAAGATGGAGATTACGGGGGGAGAATTCTAGGTGGAAATAATATTGCTGGAGGTGAAGAAGGTCAGGGCTTGAAGGATGAAGCTTTAAAGGATGGGGTTGTGGTTGAAGGTGAAGAAGTTCGGGGTTTGAAGAAAGAAGCTTATGATAGTAGGGTGACAAGTAAAGGTGGGAATGGTATTGCTGAAGGTGAAGAAGTGTGGGTCTTGAAGCGTGAAGCTATAAATAATGGGGTGACGCACGAAGGAGGAAATTGTGTTGCTAATAGGAAAGAAGTTTGGGGTTTGAAGAATGGAACTGTAAATACTGGGTTAACAGTTGAGGGGGGCAATGGTGTTGCTGAAGGTGAAGAAAAAGTTCAGGACTTGAGGAATGAAACTGTAAATAATGGAATGGTTCTTGAGGGTGGAAATGGTGTTGCTGAAGGCGAAGTTTGGGACTTGAAGAATGATGCCACGAATATCAGGGTTGTAGTTGCTGATGGGAATGGTGTTGCTGAAGATGAAGAGGTTTTGGGCTCAAAGAAAGAAGTTATATATAATGGAGTGGCAATTGCTGATGGAAATATTATCGCTTACAGTGGAGAAGATCTGTGCTCAAAGAATAAAGCTGTAAACAATCAGGTGGCAATTGCAGATGGGAGTGGTGTTACTCCAGTTGAAGATGACCGCTTGAAGAATGAAACTGTAGATCATGTAGAGGTACTTACAAATGGATTTGGTGTTGTAGAAGGGAAGTCTGGTGCTGTTGAATGTTTTCGAACATATAAGAGGCGCAAGCATGTAAAACGTGCTTCAGAATTTAAAGTTCAGGAGAACAGCAGAAAACATTTGGAAGTGGAAACTTTTAAAATTGATAATAATGGTCAAGAACGTTCTTCGGATTTAGAGTGTTTGCTTTATAGATTACAGAGTGAAGCTAATGGGCAAGAAAATGCTGTGCATAATGGATTTTCTACTGAGCCTGATGGCCATGGTGCAACTGAAAGGTGTCAGCGTTTGTTCTGTGATATCTTAGCATCTGAGAAGTTCAGTTCATTATGTAAAATATTGCTTGAAAATTTCCAAGAAATGAAACCTGAAACTGTAGTCGACTTTAGCCTGATAAACTCCAGGATGAAGGAACAAGCTTATGATGAATCACCTACACTTTTCTTATCTGATCTTCAACAGGTTTGGCAGAAGCTTCAAAATACTGGCCATCAGATTGTTGCTATAGCCAGGAGCCTCTCCAACTTGTCAAAAGCTTCCTTCCGTGAGCGGGTTGTGATTTCAGCGCACAGATCCTTTGAAGACGGAAAACAAGTGGAATCAATCTCTCACATGAAGCCGGAACGGAGACTGGAATGTGTTACATTCAAAATTGGCAGCTGCAGGCATTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGGTATATCATCTGTCTTGTATTGAGCCTGCTGTGGAAGAAATACCCCGCAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGGGGAATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCAAAGAAACTGGACGACATTGTTGGCAGGGAAATCATCCCTGCAAAAGAAGAAAACCCAAATGAATTGGAGGAGAATTCAAATTGTACTTGTGATGGGATTCCAGTTTCCACAGGTCCAAGACATCTTTCTGTCTGCAAAATTTGTAAAATGGTGGTGCATCATGGAAAAATAAAAATCTGTGGTCACTTATTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCTAGTAAGCAGCTTAGGACATACGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTCTGCTTCACCGACAAAGATGATGATAAGATTGTTCTCTGTGACGGCTGTGATCATGCATACCATATGTACTGTTTGAAACCTCCGCTGAATTTGATTCCTGTGGGGAAATGGTTCTGCATAAAATGTGATGCAGGGATATTAGCAATACGTAAGGCAAGAAAGGCACACGAGAGCAAGAAAGGGAAAATTGGTCAGAAGGATTTAAAGCCAAATGAAGACATTGACAAGAAATGGAGCAGAAAACGTGAACGGGAATCTGATAAAGTTGGAGGAATGGAGATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGAAAATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAACATAA 2283 0.4157 MQAEDGTSNGDKWAGLGRRSDSEDGDYGGRILGGNNIAGGEEGQGLKDEALKDGVVVEGEEVRGLKKEAYDSRVTSKGGNGIAEGEEVWVLKREAINNGVTHEGGNCVANRKEVWGLKNGTVNTGLTVEGGNGVAEGEEKVQDLRNETVNNGMVLEGGNGVAEGEVWDLKNDATNIRVVVADGNGVAEDEEVLGSKKEVIYNGVAIADGNIIAYSGEDLCSKNKAVNNQVAIADGSGVTPVEDDRLKNETVDHVEVLTNGFGVVEGKSGAVECFRTYKRRKHVKRASEFKVQENSRKHLEVETFKIDNNGQERSSDLECLLYRLQSEANGQENAVHNGFSTEPDGHGATERCQRLFCDILASEKFSSLCKILLENFQEMKPETVVDFSLINSRMKEQAYDESPTLFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFRERVVISAHRSFEDGKQVESISHMKPERRLECVTFKIGSCRHCGDKAEGVDCLVCDSCEEVYHLSCIEPAVEEIPRKSWFCANCTARGIGCQHENCVVCERLNVPKKLDDIVGREIIPAKEENPNELEENSNCTCDGIPVSTGPRHLSVCKICKMVVHHGKIKICGHLFCPSKYYHVRCLSSKQLRTYGHCWYCPSCICQVCFTDKDDDKIVLCDGCDHAYHMYCLKPPLNLIPVGKWFCIKCDAGILAIRKARKAHESKKGKIGQKDLKPNEDIDKKWSRKRERESDKVGGMEMLITAANTLNSEEKMNAIQIESERTLT 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01008 760 Gene3D - 371 526 - -
Viun8g01008 760 MobiDBLite consensus disorder prediction 1 47 - -
Viun8g01008 760 Pfam PHD-finger 479 525 IPR019787 -
Viun8g01008 760 Pfam PHD-finger 637 683 IPR019787 -
Viun8g01008 760 SMART PHD_3 478 524 IPR001965 -
Viun8g01008 760 SMART PHD_3 640 683 IPR001965 -
Viun8g01008 760 SMART PHD_3 588 637 IPR001965 -
Viun8g01008 760 MobiDBLite consensus disorder prediction 698 732 - -
Viun8g01008 760 MobiDBLite consensus disorder prediction 700 730 - -
Viun8g01008 760 FunFam PHD finger protein EHD3 isoform A 370 527 - -
Viun8g01008 760 PANTHER OS02G0192300 PROTEIN 397 525 - -
Viun8g01008 760 ProSiteProfiles Zinc finger PHD-type profile. 476 526 IPR019787 -
Viun8g01008 760 CDD PHD_RSF1 638 682 - -
Viun8g01008 760 SUPERFAMILY FYVE/PHD zinc finger 466 525 IPR011011 -
Viun8g01008 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 686 IPR013083 -
Viun8g01008 760 SUPERFAMILY FYVE/PHD zinc finger 637 685 IPR011011 -
Viun8g01008 760 ProSiteProfiles Zinc finger PHD-type profile. 635 685 IPR019787 -
Viun8g01008 760 ProSitePatterns Zinc finger PHD-type signature. 479 523 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01008 Viun-Chr8 11499583 11521529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01008 637 700 C2H2 Transcription Factor Family AT3G01460 53.125 2.24e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun8g01008 PHD 1.7e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01008 - - vun:114195482 1549.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01008 8 11499583 11521529 Viun8g01008 8 11499583 11521529 ECH
Viun8g01008 8 11499583 11521529 Viun9g02321 9 32772940 32781874 PCT