Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01006 ATGGCAACAATGAGATTGAAGGAGATGCAGAAGCAACTGACCAGACTGACCGTGCTGTTAGTGATGGCTTTAACTGCCGCCAGCCAAGCCCAGCCCGGCTGCCCGGACTCCTGCGGAAGTGTTTCATCGATTCCGTATCCATTCGGCATCGGCACTTCTTCCGTCAACGGTGAAAACTGTTTTCTGGAGAAAGATTTGAATCTCACATGCACAGACTCAACCTTATATCGCGGTCAAGGTAACGTCCAAATTCTCAACATAAGCCTCGCCGGTAAAATCGACATGCTCGTCCACATCTCCAAGGTCTGCAAAAACGAATTGTTGGGTGGAGTAAAAACACAAGGTAACCTTCCCAGTCTCAGAACACCGGCTTTCGCCATTTCTAGTGAGGACAACAAGTTCGTAACCGTAGGCTGCGACACCTATGGCTATCTCAACACTTTCCGCAACGGCACACAATCTTCAACGGGGTGTTTAACCAGATGCGACAGCATAGAGAGCGTCCAAAGCAGGCAGAGAAGCGGAAACTGCACCGGCATAGGGTGTTGCCAGGTCGACATTCCTCCTGGCATGAAGAACATCAGTTTCCAAGCTTCCACTTTCAAAAATTTCAATTCCACTTCTGACATTCCGGAGTGTACAAATAACGAACACACCTGCGATAGTAAAGATCATTGTCGTGAAACTCTTGGCTCTTTTGAATGTTTCTGTCCTGACGGACTTATTGGAGATGGAACAAGAGAAGGCGGTGGATGCCACACAAGGCAGAAGGCTGATGCATTTACGAAGATCATCATTGGTGCAGGGGTAGGATTAATTGCTCTATTCATAGGAATTTTTTGGTTGTACTTGATATACGAGAAAAGGAAAGTCTTCAAATTGAAGCAGAAGTTTTTTCAACAGAACGGAGGCATTATTCTTAGGCAACAACTCTCCACAAGAGAAGACTCATCTCATACCACTACGATTTTCAATGCTGAAGAACTTAAGAAAGCCACCAACAACTTTGATGAGAGCTTAATCATAGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGAGTTCTATCAAATAACAAAGTTGTAGCTATCAAAAAGTCCAAAATAGTGGATCAGAGCCAGGTACAACAATTCATAAATGAGGTCATTATATTGTCACAAATTAATCACAGGAATGTGGTCAAACTCTTGGGATGTTGTTTAGAGACAGAAGTTCCTTTATTGGTCTATGAATTTGTTAACAATGGCACCCTTTTCGATTATTTACATAATCAAGGCCATAGGGTTAACGTGTCATGGAAAATGCGTCTAAGGATAGCTACAGAAGCAGTTGCAGCTCTGTCATATCTGCACTCAGCAGCTTCCATACCCATCAGAGACGTGAAGACTTCTAACATACTCTTAGATGACAATTACACTGCCAAAGTCTCTGATTTTGGAGCTTCAAGATTGGTTCCAATTGAGCAAACTGAGATAGCCACAATTGTGCAAGGGACCTTTGGGTATTTAGACCCAGAGTACATGCAATCAAGCCAGTTGACAGAAAAGAGTGATGTTTATAGTTTTGGGGTAGTGCTTGTAGAACTTCTTACAAGGGAGAAACCTTTCTCTTTTGACAAGACAGAAGAGAAACGAAGTCTTACAGTTCACTTTCTTTGTAGCTTGAAAGAGGATCGTCTGTTTGATGTTCTTCAGGTGGGTCTTTTGGATGAAGAAAACCAACAAGAAATTATGGAGGTTGCTATTCTTGCTGCCAGATGCTTGAGACTTATAGGGGAGGAAAGACCTAGCATGAAGGAAGTGACAATGGAACTAGAGGGAATACAACTTACAAAGAAACACCTTTGGATCAATACAGGCAAAAACTTTGAGGAGAGTCAATACTTGCTTCATGAGACACAAAGCTCTTATGAACATGGTGATAGTAGTGGCCAACAAAATATTGAATATGATAGCTTGAGAGAACATGAATTAATTGACTTTGGTAATGGAAGATGA 1995 0.4231 MATMRLKEMQKQLTRLTVLLVMALTAASQAQPGCPDSCGSVSSIPYPFGIGTSSVNGENCFLEKDLNLTCTDSTLYRGQGNVQILNISLAGKIDMLVHISKVCKNELLGGVKTQGNLPSLRTPAFAISSEDNKFVTVGCDTYGYLNTFRNGTQSSTGCLTRCDSIESVQSRQRSGNCTGIGCCQVDIPPGMKNISFQASTFKNFNSTSDIPECTNNEHTCDSKDHCRETLGSFECFCPDGLIGDGTREGGGCHTRQKADAFTKIIIGAGVGLIALFIGIFWLYLIYEKRKVFKLKQKFFQQNGGIILRQQLSTREDSSHTTTIFNAEELKKATNNFDESLIIGKGGYGTVFKGVLSNNKVVAIKKSKIVDQSQVQQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLFDYLHNQGHRVNVSWKMRLRIATEAVAALSYLHSAASIPIRDVKTSNILLDDNYTAKVSDFGASRLVPIEQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTREKPFSFDKTEEKRSLTVHFLCSLKEDRLFDVLQVGLLDEENQQEIMEVAILAARCLRLIGEERPSMKEVTMELEGIQLTKKHLWINTGKNFEESQYLLHETQSSYEHGDSSGQQNIEYDSLREHELIDFGNGR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01006 664 CDD EGF_CA 209 244 - -
Viun8g01006 664 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 613 IPR045274 GO:0007166
Viun8g01006 664 Pfam Wall-associated receptor kinase galacturonan-binding 34 92 IPR025287 GO:0030247
Viun8g01006 664 FunFam Fibrillin 2 205 248 - -
Viun8g01006 664 Gene3D Transferase(Phosphotransferase) domain 1 412 627 - -
Viun8g01006 664 CDD STKc_IRAK 342 607 - -
Viun8g01006 664 SUPERFAMILY Protein kinase-like (PK-like) 315 612 IPR011009 -
Viun8g01006 664 FunFam Wall-associated receptor kinase 2 412 627 - -
Viun8g01006 664 Pfam Protein kinase domain 340 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01006 664 ProSiteProfiles Protein kinase domain profile. 336 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01006 664 ProSitePatterns Protein kinases ATP-binding region signature. 342 365 IPR017441 GO:0005524
Viun8g01006 664 Gene3D Laminin 195 248 - -
Viun8g01006 664 FunFam Wall-associated receptor kinase 2 306 411 - -
Viun8g01006 664 Gene3D Phosphorylase Kinase; domain 1 303 411 - -
Viun8g01006 664 SUPERFAMILY EGF/Laminin 212 246 - -
Viun8g01006 664 SMART serkin_6 336 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01006 664 ProSiteProfiles EGF-like domain profile. 209 247 IPR000742 -
Viun8g01006 664 Pfam EGF domain 213 246 IPR024731 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01006 Viun-Chr8 11356483 11359166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01006 209 664 Receptor kinase-like Gene Family AT1G21230 49.028 1.94e-143 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun8g01006 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01006 - - gmx:100785674 706.057