Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00980 ATGCCCAATTATCGTGTTAATCACTGGAGGGAAGATGAGGATCAAAAGCTAACCCAACTTGTTCAACAACATGGTCCTCAGGACTGGAATGCAATTGCTCAACATATACAAGGACGAACTGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTGATCCTGGTGTTAACAGAAACCCTTTTACGAGAGAAGAAGAAGAGAGACTCCTTGCAGCTCAAGAGGTTCATGGAGCAAAATGGGCAACCACAGCCAAACTCTTCGATGGGAGAACCGACAATGCCTTGAAAAACCATTGGCACGTTTTGATCGCACGAAAGCGAAAGGAAGCCAACAATGGAAGTTTGCAAGACCTAACGATGAACGCTTCAAGTTCTTCCTCCTCTCACCATCACACATTGTTTGACATCATGAACTTCAACGCTGCACGAACCCCACTTCCACCTTCCTTCAGCCCTATCAATTTTGGATCAGTGCCATCTTTCTCAGACTCTTTTCCTGGGAAGGAAGGGAGTCATCCTTTTGGGCTGTTGAATCATCGTGATGCTGCTGCTGCTGCTGTTTCTTCTTCTTCTGGTGGAATCATGATGAGAAAGGGCTTGTTTCATAGCTCATCATCAGCATTCACTAGGTTTAAGGGTTCTTCTTCCTCTGATGATGATGCTGGATTCAAGGATGTTACTTTCTATGATTTTCTTGGTGTCGGTGCTGATGATGATGATGATGATGAGTGA 732 0.4467 MPNYRVNHWREDEDQKLTQLVQQHGPQDWNAIAQHIQGRTGKSCRLRWRNHLDPGVNRNPFTREEEERLLAAQEVHGAKWATTAKLFDGRTDNALKNHWHVLIARKRKEANNGSLQDLTMNASSSSSSHHHTLFDIMNFNAARTPLPPSFSPINFGSVPSFSDSFPGKEGSHPFGLLNHRDAAAAAVSSSSGGIMMRKGLFHSSSSAFTRFKGSSSSDDDAGFKDVTFYDFLGVGADDDDDDE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00980 243 CDD SANT 9 52 IPR001005 -
Viun8g00980 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Viun8g00980 243 CDD SANT 60 103 IPR001005 -
Viun8g00980 243 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Viun8g00980 243 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Viun8g00980 243 SMART sant 57 105 IPR001005 -
Viun8g00980 243 SMART sant 5 54 IPR001005 -
Viun8g00980 243 FunFam MYB transcription factor 7 57 - -
Viun8g00980 243 SUPERFAMILY Homeodomain-like 3 99 IPR009057 -
Viun8g00980 243 Gene3D - 59 132 - -
Viun8g00980 243 Gene3D - 7 57 - -
Viun8g00980 243 Pfam Myb-like DNA-binding domain 9 69 - -
Viun8g00980 243 PANTHER MYB PROTEIN-RELATED 8 127 - -
Viun8g00980 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 107 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00980 Viun-Chr8 10863900 10865531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00980 2 235 MYB Transcription Factor Family AT4G33450 39.754 1.01e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g00980 Myb_DNA-bind_6 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00980 K09422 - gmx:102660725 213.386