Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00977 ATGCCCCAAGCAGTAGCCGCTGGGAGAATGACTTCCTCTGAAACCTTTCGAAGTGTTGAAGAAGATGATTCTACTGCTAACAAAAAACGCGACGTGTTCTACGATGTTTATGGACCCGAAGGTAAGGCAGATGTTGTTTTCAAGTCACCAGAAGATAATTCAGTTCTTGATCTAAAGGATATTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCGTCATGGGTTTTTATCAAGAATAAACCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTAGATGCAGCCTTGTTTTTGTCGCTGTCTAAAATGCTTCATAATTTAAAGAAAATCTGTGGTAAACCAAGGCCTGTCCTGGCTCTTAGCTGTGTGTCAGATAGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGAAAAAGGGATGAGAATAGACCTGCTCTGACATCACATCAAGAAGAAGGTTGTCATGATACAGACAGTCTAACATTTAAAGAGCTTACGAAAGACATACCTTTCCCTGTTACGTACTATACACTAACTGAGAAAGAGCTGGAAGAGAATGGATATTCTTTCAATCAACCAGGTTTTCTTTCTACTTTGCCTGCACCTCCAGGATCTTCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAATGAAGGTTTTGAGCTGACAAGAATTACTCTAGTGGACATCAAAGGAAAGGTTTTGATAGATAGATTGGTTAAACCCTCAAATGCTATCATTGACTACAACACAAGATTTAGTGGAATAACGCCTGAGATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGCAACTGTTCCTAAAGTTTGTTTACGAGGAGACTATCCTTGTTGGGCATTCTCTGGAAAATGATTTATTAGCATTGAAGATATCCCATGACTTGATCATAGACACGGCAGTGTTGTACAGACACCCCCGAGGAACATCTCATAAAAAAGCTCTACGGTTTCTTGCTAAGAAATTTCTTGCAAGGGAGATACAACAATCAGCGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCCTGGAATTGGCACTATTGAAGATAAAAAATGGGCCTGACTTTGGTTCCCCTCCATCCTTTACAAGGAAAAAGTTCCTTTCTATTCTGAGTGAATCTGGCAAAACTTCGTCATTGATTGATGATATATCCATAGTAAAACGGTATGCCTCTGAGTCCTCTAATGCAATTCCAGTGATCTCTGATGATGAAGCACTTGCAAAGACCAAGAAGGAGGTGAAGAATGACAAGGTACATTTTATCTGGACACAGTTTTCGGAGCTACACTCGTACCTGAAGAAGCAAGCTGAAGATTCTGATAGTTTGAATGAAAGACTTGCCGAGATGATGGCATTGCAAACGTGTCAGAACAATTCTGCTAAACAGAAAGGCTTCAAGTTGAAAGCACCTGCTGAACTGAAGGAAATTATGGCTCGCATGGATGCTAGAATTTATAATCTCTACTCGTCATTACCCACAAATGCTATGATGATAATTTTTACTGGTCACGGAGACACTGCTATTGTCCGCAGGTTGAGGAGAATGCTTGCAGAGCAGAATGAAAGTAATTTATGTCGAGAAAAGATCGTGGAAATTTTGGCAGAATTTCAGGCCCACGCAGAAGTAGCATTGTGTTTTGTAGGCGTAAAGCATTGA 1722 0.4059 MPQAVAAGRMTSSETFRSVEEDDSTANKKRDVFYDVYGPEGKADVVFKSPEDNSVLDLKDIQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSLSKMLHNLKKICGKPRPVLALSCVSDSMQTIDALLTCKMKRKRDENRPALTSHQEEGCHDTDSLTFKELTKDIPFPVTYYTLTEKELEENGYSFNQPGFLSTLPAPPGSSFYEMLALDCEMCITNEGFELTRITLVDIKGKVLIDRLVKPSNAIIDYNTRFSGITPEMLDGVTTSLRDIQQLFLKFVYEETILVGHSLENDLLALKISHDLIIDTAVLYRHPRGTSHKKALRFLAKKFLAREIQQSANGHDSIEDARATLELALLKIKNGPDFGSPPSFTRKKFLSILSESGKTSSLIDDISIVKRYASESSNAIPVISDDEALAKTKKEVKNDKVHFIWTQFSELHSYLKKQAEDSDSLNERLAEMMALQTCQNNSAKQKGFKLKAPAELKEIMARMDARIYNLYSSLPTNAMMIIFTGHGDTAIVRRLRRMLAEQNESNLCREKIVEILAEFQAHAEVALCFVGVKH 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00977 573 SMART exoiiiendus 217 376 IPR013520 -
Viun8g00977 573 CDD REX1_like 219 368 IPR034922 -
Viun8g00977 573 Gene3D - 215 376 IPR036397 GO:0003676
Viun8g00977 573 SUPERFAMILY Ribonuclease H-like 218 371 IPR012337 -
Viun8g00977 573 Coils Coil 454 474 - -
Viun8g00977 573 FunFam RNA exonuclease NEF-sp 214 378 - -
Viun8g00977 573 Pfam Exonuclease 220 366 IPR013520 -
Viun8g00977 573 MobiDBLite consensus disorder prediction 1 23 - -
Viun8g00977 573 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 25 382 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00977 Viun-Chr8 10777357 10786356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00977 218 366 C2H2 Transcription Factor Family AT3G27970 26.946 4.86e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00977 K14570 - gmx:100802793 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00977 8 10777357 10786356 Viun8g00977 8 10777357 10786356 ECH