Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00971 ATGTCTACTGTTGGCCAGACAATCAAGTGCAAAGCTGCCATTGCATGGGAGGCAGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCGCCACCCCAAACCGGAGAAGTCCGTTTGAAGATCCACTACACCTCCCTTTGCCACACTGATGTTTACTTTTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGTATTTTTGGCCATGAAGCTTCAGGTATTGTTGAGAGCGTTGGCGAGGGTGTCACTCATTTGCAACCAGGAGACCATGCCCTCCCTGTGTTCACAGGAGAGTGTGGGGATTGTGTGCATTGTAAGTCAGAAGAGAGCAACATGTGTGAGCTCCTCAGGATCAACACCGACAGGGGTGTCATGATCAGTGATGGTAAATCAAGGTTCTCTAAGGATGGAAAACCCATTCACCATTTCTTGGGAACCTCCACATTCAGTGAATACACAGTTCTCCACGCAGGATGTGTTGCAAAGATCAACCCAGCTGCTCCACTTGACAAAGTTACTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGTGCTACTGTTAATGTTGCAAAACCAAAACCTGGTTCCTCTGTTGCCATTTTCGGACTTGGAGCCGTTGGCCTTGCGGCTGCAGAAGGGGCAAGGATTTGTGGTGCTAAAAGAATCATTGGAATTGATTTAGTTCCAGAAAGATTTGAACAAGCTAAGAAGTTTGGTTGTAACGAGTTTGTGAATCCAAAGGATCATGATAAGCCTATTCAACAGGTAATTGCTGAAATGACCAATGGAGGTGTGGACCGGGCTGTTGAATGCACTGGCAGCATCCAGGCCATGGTTTCGGCATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGCCTAGTAAAGATGATGCATTCAAAACTGCTCCTATTAATTTCCTGAATGAGAGGACTCTTAAGGGAACCTTTTATGGCAACTACAAACCACGTACTGATCTTCCTGGTGTTGTGGAAAAGTACCTCAGCGGGGAGCTAGAAGTAGATAAGTTCATCACTCACTCAGTTCCCTTCACAGAGATCAACAAAGCCTTTGATTACATGCTGAAAGGAGAGTCCATTAGGTGTCTTATTCGCATGCAAGACTAA 1140 0.464 MSTVGQTIKCKAAIAWEAGKPLVIEEVEVAPPQTGEVRLKIHYTSLCHTDVYFWEAKGQTPLFPRIFGHEASGIVESVGEGVTHLQPGDHALPVFTGECGDCVHCKSEESNMCELLRINTDRGVMISDGKSRFSKDGKPIHHFLGTSTFSEYTVLHAGCVAKINPAAPLDKVTVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARICGAKRIIGIDLVPERFEQAKKFGCNEFVNPKDHDKPIQQVIAEMTNGGVDRAVECTGSIQAMVSAFECVHDGWGVAVLVGVPSKDDAFKTAPINFLNERTLKGTFYGNYKPRTDLPGVVEKYLSGELEVDKFITHSVPFTEINKAFDYMLKGESIRCLIRMQD 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00971 379 FunFam alcohol dehydrogenase 1-like isoform X1 18 181 - -
Viun8g00971 379 Gene3D - 18 369 - -
Viun8g00971 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Viun8g00971 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 342 IPR036291 -
Viun8g00971 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Viun8g00971 379 SUPERFAMILY GroES-like 328 376 IPR011032 -
Viun8g00971 379 CDD alcohol_DH_plants 8 376 - -
Viun8g00971 379 SUPERFAMILY GroES-like 3 186 IPR011032 -
Viun8g00971 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Viun8g00971 379 FunFam Alcohol dehydrogenase class-P 182 320 - -
Viun8g00971 379 Pfam Zinc-binding dehydrogenase 205 330 IPR013149 -
Viun8g00971 379 Gene3D - 182 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00971 Viun-Chr8 10627409 10630187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00971 34 369 Monolignol Biosynthesis Gene Families AT1G72680 24.484 6.01e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00971 K18857 - gmx:100800668 716.842