Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00960 ATGGTGCTTGATATGCAGATGATGAAGAAGAAGAAATCAGATGCAGAAAGGCAGTATGACGACTACAATGAATTTAAGAGCAATGAAGATAAATATGATAGTCAATATAAGAAAGAGAAGGAGAGGAAGAAGAAAAAACTGAGTGAAGAAGGGAAAAGTAAGGAGTATAATGAATTTGAAAGAAATGAAGGTGAAGATGATACCCAAAGTAAGAAGAGGAAGAAAAAATTGAGTACAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGCTGAAGGTGATGCCAGTAAGGAGAGGAAGAAGAAAAAACTGAGTGAAGAAGACAAATGTAAGGAGTATAATGAATTTGAAAACAATGAAGGTGAAGATGGTGCCCAGGGTAGGAAGAGAAAGAAGAAAAAATTGAGTAAAGAAAGCAAAAGTAAGGAGTATAATGTCTTTGAAAGGAATGAAGGTGAAGATGGTGTCAAAGATAAGAAGAAGAAGAACAACATGAGTGAAGAAGCCAAAAGTAAGGAGTATAATGAACTTGAAAGCAATGAAGTTGAAGACGATGCCCAAGGTAAGAAGAAAAAATTGAGTAAAGAAAGCAAAAGTGAGGAGTATAATGTCTTTGAAAGGAATGAAGGTGAAAATGATGCCAAAGATAAGAAGAAGAAGAGAAAAAAACATGGTGAAGAAGGTAAAAGTAAGGAGTATAATGAGTTTGAAAACAACGAAGGTGAAGATGATGCCCAAGGTAAGAAGAGGAAGAAGAGAAAATTGAGTAAAGAAAACAGAAGTAAGGAGTATAATGTATTTCAAAGGAATGGATATGAAGACAATGTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGACAGCAAAAGCAAGGACAAAAATATGATGACAAAGAAAGCCAAGGCAGATAATGGCGACTCTCCTAATCCTGCACACAGCGGATTATCGAAACCCAAACGGGTAACTTTCTCTGATGAAGTGGAGGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACAAGAAGAAGACGAGCAGATTAAATTGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAGGGATCATCGGGAAGTTAGATGTTGTTGGAAGGAAATTGCAGCAGCCTTACCCCACAGGCCAATGTATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGAGTGAGAAGCGAGAGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTGAAGGAACAACATGGATCTAATTGGAAACAAGTAGCTGACGCATTGGGTAAAAATCGAATGCATGTAAAGGATGCGTGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGCTGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTGGACCTACGCGTGAGGGCTTCACAGGGTTATAGAAAATCAAAGCATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGGTGAAAAGTTGGTCACTAGAAACTCCGTGAGCTGCTGCCACAAGTGGTATGATAAATTAAGATCACCCATGGTTGCTACTGGTGCATGGAGCGATACTGATGACTATCGCTTGGTCGATGCTTTGTATAATTTGGACGCGTGCTGCATGGAGGAGGTGAATTGGGACGATCTGCTTGAGCATAGGACTGGTGAGGCATGTAGAAAACGGTGGAACCAAATTGTCCGATATATTGGAGAGCATGGAGGGAAGTCATTTGCTGAGCAGGTTGAAATTCTTGCAAAAAGATATTGCCCCAACTTACTGGAAGAAAGAGAGACCTTTGATGCAAAACCGTTGGTATGTTGA 1875 0.3915 MVLDMQMMKKKKSDAERQYDDYNEFKSNEDKYDSQYKKEKERKKKKLSEEGKSKEYNEFERNEGEDDTQSKKRKKKLSTESKSKEYEVFEKNEAEGDASKERKKKKLSEEDKCKEYNEFENNEGEDGAQGRKRKKKKLSKESKSKEYNVFERNEGEDGVKDKKKKNNMSEEAKSKEYNELESNEVEDDAQGKKKKLSKESKSEEYNVFERNEGENDAKDKKKKRKKHGEEGKSKEYNEFENNEGEDDAQGKKRKKRKLSKENRSKEYNVFQRNGYEDNVEGRKSKKEKMIEDSKSKDKNMMTKKAKADNGDSPNPAHSGLSKPKRVTFSDEVEVCCDGLVRGKRFTQEEDEQIKLAVYNFIESRGLGDEGLDMVLHCRDHREVRCCWKEIAAALPHRPMYSVYTRAHILFERSEKREWTPEEYEFLRKVKEQHGSNWKQVADALGKNRMHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGEKLVTRNSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCMEEVNWDDLLEHRTGEACRKRWNQIVRYIGEHGGKSFAEQVEILAKRYCPNLLEERETFDAKPLVC 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00960 624 MobiDBLite consensus disorder prediction 229 252 - -
Viun8g00960 624 ProSiteProfiles Myb-like domain profile. 410 459 IPR001005 -
Viun8g00960 624 ProSiteProfiles Myb-like domain profile. 531 584 IPR001005 -
Viun8g00960 624 Pfam Myb-like DNA-binding domain 418 476 - -
Viun8g00960 624 ProSiteProfiles Myb-like domain profile. 460 529 IPR001005 -
Viun8g00960 624 MobiDBLite consensus disorder prediction 141 219 - -
Viun8g00960 624 PANTHER GB|AAC33480.1 9 623 - -
Viun8g00960 624 Gene3D - 419 457 - -
Viun8g00960 624 SUPERFAMILY Homeodomain-like 415 476 IPR009057 -
Viun8g00960 624 SMART sant 341 412 IPR001005 -
Viun8g00960 624 SMART sant 414 461 IPR001005 -
Viun8g00960 624 SMART sant 535 586 IPR001005 -
Viun8g00960 624 SMART sant 464 531 IPR001005 -
Viun8g00960 624 MobiDBLite consensus disorder prediction 1 132 - -
Viun8g00960 624 MobiDBLite consensus disorder prediction 1 324 - -
Viun8g00960 624 Gene3D - 458 533 - -
Viun8g00960 624 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 415 463 IPR017930 -
Viun8g00960 624 MobiDBLite consensus disorder prediction 276 305 - -
Viun8g00960 624 SUPERFAMILY Homeodomain-like 509 588 IPR009057 -
Viun8g00960 624 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00960 Viun-Chr8 10214726 10217662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00960 412 585 MYB Transcription Factor Family AT4G32730 28.571 5.53e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun8g00960 Myb_DNA-bind_6 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00960 - - var:108338141 909.442