Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00958 ATGATTTTGATGTCAACCTCCTCCGTGTTCATCCTTGCTCTCCTTCATTTGTTGATTCTCTCTTTCCAAGTGAACTCGCTTTCTATGAATGTCCTATTTGCTTCATCTGAACAAGCTAAAACATTGTTACTTAAACCTTCTTGGCAATCTCTGTCTCAAGGTCCTATTGTGACTCCAAGACCAAAACTTCTTCATGATGACCATCATCACCACAGTGGTAAACCTTATCCTTTGGTTCCATCCCCTTATAAAGACCCAGCTTGTAGCCAAATCTGTACTGATCCACTCACTGCAACTCCTTTCGGTTCACCTTGTGGCTGTATATTTCCCATGAAAGTCAGACTAGTACTGGGTGTAGCTCCTCTGGTTGTTTTCCCAGTCATTGCTGAGTTAGAGATTGAAGTTGCATCTGGAACATTTTTGAAGCAGAGCCAAGTGAGGATAATAGGTGTCAGTGCCGACAATCAAAATCAGTGGAGAACCATTGTTGATATCGACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACTGCATTTCTGTTGTATGAGAGGTTTTGGCACAAAAAAGTTCATCTAAATAGGAGCCGTTTTGGTGATTATGCAACATTGTACGTTGTTTATCCAGGTATTCCATCACCACTGCCACCTGGATATCCAATTGGGAGTAGTCCCCAGCCCAGTGAAACCGTTGGTTTTCTCCCAATCACTGCTTCCGTCATGAGTGAGCATGAGAAATTGACTCTTAAAACCATACTCATTATTGCTCTATGTTCTGCTGTACCCTTTTTAGTTTTGGTTGGAGCATTTTTCATTTTGTTGAAATGGTGGAAAATTAGGAGCTCATCAAGTGCCATCGGCCCTTCACTCACGTCATATCTAAATAAGAGATCTGGCTTGGAATCTATGTTGTCCGGCAGAATTATGAGCTCAAGATCTATGTCCCTTGTGTCCACTATTGCTGCTTCTATTCTCTCCATTAAAACATTTTCCTTTTCTGAGCTTGAGAAAGCAACAGATAAATTCAGTTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGACGAGTTTATTCTGGGACATTGGATGATGGAAATGAAGTAGCGGTTAAGCTGCTAACAAGGGATGGTCAGAATAGAGACCGTGAATTTATTGCAGAAGTTGAGATGCTAAGCCGTTTGCATCATCGTAATCTTGTGAAACTCTTTGGTATATGCATAGAAGGGAGAAGGCGTTGCTTGGTTTATGAGCTTGTTTGCAATGGCAGTGTTGAGTCTCATTTGCATGGTGCTGACAAGAAAAACTGCCCTCTGGATTGGGAAGCACGGAAAAGAATTGCTATTGGATCTGCAAGAGGTTTGGCCTATCTTCACGAGGATTCCAATCCTCGTGTAATTCACCGAGACTTTAAAGCTAGTAACGTGTTGTTAGAAGATGACTTTACTCCTAAGATTTCTGATTTCGGATTAGCCAGAGAAGCAGGTGAAGGAAATAGACATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGCCATTTACTAGTTAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAGCTTATAACAGGCAGAAAATCAGTGGACATGTCTCAACCTCAAGGAGAGGAGAATCTTGTAACGTGGGCTCGACCACTGTTGAGATGCAGGGAAGATCTAGAAAAGCTGGTGGATCCATTTTTGGCTGGAAAGTATGACTTGGATGAGATGGCAAAGGTGACTGCTATTGCTTCCATGTGCGTACACCCGGAGGTCACTCAAAGGCCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCTACAACGACACCAATGAGAGTGAGAAGGAGTCTTTGTGGCATGAATCGGATTTTGGAGGTGACCTTGTGTTTTCTGATAGCAGTTGGTTGGATGGTGAAGGGGTAACCCCGACATTAACTTATGGACCAGAATCTTCCCTCGTCCCTATGGAGTACAGTTCTGGTCTGCTAGAAATGGAAAAGGGAACATCAAGCTTGAATGCAGATGAGACATCTTTGCCAATCAGGCACGGGAATAGATCAGGCCCCTTGAGAACAGCCCGGGGTAAGCCATCCTTTACTAAGCTTACTCGAAGTCGCAGTGATCATGTCGTATCCTTCCAACCGTGTTTGTAA 2187 0.4294 MILMSTSSVFILALLHLLILSFQVNSLSMNVLFASSEQAKTLLLKPSWQSLSQGPIVTPRPKLLHDDHHHHSGKPYPLVPSPYKDPACSQICTDPLTATPFGSPCGCIFPMKVRLVLGVAPLVVFPVIAELEIEVASGTFLKQSQVRIIGVSADNQNQWRTIVDIDLVPLGEKFDNTTAFLLYERFWHKKVHLNRSRFGDYATLYVVYPGIPSPLPPGYPIGSSPQPSETVGFLPITASVMSEHEKLTLKTILIIALCSAVPFLVLVGAFFILLKWWKIRSSSSAIGPSLTSYLNKRSGLESMLSGRIMSSRSMSLVSTIAASILSIKTFSFSELEKATDKFSSQRVLGEGGFGRVYSGTLDDGNEVAVKLLTRDGQNRDREFIAEVEMLSRLHHRNLVKLFGICIEGRRRCLVYELVCNGSVESHLHGADKKNCPLDWEARKRIAIGSARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKISDFGLAREAGEGNRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELITGRKSVDMSQPQGEENLVTWARPLLRCREDLEKLVDPFLAGKYDLDEMAKVTAIASMCVHPEVTQRPFMGEVVQALKLIYNDTNESEKESLWHESDFGGDLVFSDSSWLDGEGVTPTLTYGPESSLVPMEYSSGLLEMEKGTSSLNADETSLPIRHGNRSGPLRTARGKPSFTKLTRSRSDHVVSFQPCL 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00958 728 Gene3D Phosphorylase Kinase; domain 1 315 417 - -
Viun8g00958 728 Pfam Protein tyrosine and serine/threonine kinase 344 613 IPR001245 GO:0004672|GO:0006468
Viun8g00958 728 MobiDBLite consensus disorder prediction 685 708 - -
Viun8g00958 728 FunFam receptor-like serine/threonine-protein kinase ALE2 315 417 - -
Viun8g00958 728 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Viun8g00958 728 SUPERFAMILY Protein kinase-like (PK-like) 326 617 IPR011009 -
Viun8g00958 728 ProSiteProfiles Protein kinase domain profile. 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00958 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Viun8g00958 728 FunFam Receptor-like serine/threonine-protein kinase ALE2 418 631 - -
Viun8g00958 728 Gene3D Transferase(Phosphotransferase) domain 1 418 636 - -
Viun8g00958 728 PANTHER OS01G0750732 PROTEIN 87 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00958 Viun-Chr8 10193318 10200781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00958 89 715 Receptor kinase-like Gene Family AT5G56890 52.778 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Viun8g00958 PK_Tyr_Ser-Thr 9.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00958 - - gmx:100790546 1001.5