Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00942 ATGAGTACTGCACAACAAGAGAAGTTTGTTAGGTTTCGGGATTCAAATTTGGAGAAGAGTTCTGAGGGCAATTATTCTGACACTAAAATTTCACAGTCAGGGATATTTAGAACTACATTAAGTTCAGTTTCGGAGAAGTTTCAAAATGGATTGGAATCTGGTTCTGATAGGATGAAAAGATTCAGAACATCATTCAAATCTTTTCCCTTTAGTAGTGTTCTTTGTAGAAGCTTTAGTTCTAGAAAGAAAATACTTGATCCACAGGGTCCATTCCTTCAAAGGTGGAACAAGATTTTTGTCTTATTATGTGTTATCGCAGTATCACTGGATCCTTTGTTCTTTTATGTTCCGGTTATTGATGATGAGAAAAAATGTCTTTCACTGGACATTAAGATGGAGATTACAGCAACTGTCTTAAGATCTTTCTCTGATGCTTTTTATATAATCCACATGATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAAGAGGTATCTATCATCGTATTTCTTTGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAGATGAGTGGTTTTAAATCACTTAATACCAAGAACTTGCTGAAATTTGTTGTCTTCTTCCAATACGTGCCTCGTTTATTGCGAATCATTCCATTATATAGAGAAGTTACAAGGGCCTCTGGCATTCTCACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTTGCGGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCTCATGTTGGCAAGAAGCCTGTCGAAATAATACAGCAGTGTGTAGCAAGGCAGATATGTATTGCAATGATTATTTGGGTGGGTTGAGCAAAATTTCGACATTCCTGAATACTTCTTGCCCAATTCAGAATGCAGATAAAAATCTCTTTGATTTTGGAATGTTCCTTGATGCTCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTTCCACAAAAATTCTTTTACTGCTTTTGGTGGGGCTTAAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCTATGTCTGGGAAATATGTTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTGTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTAAAGAGGAGGGATGCAGAACAGTGGATGTCTCACCGATTACTTCCCGACGGCCTGAGAGTGCGAATAAGACGATACGAACAGTACAAATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGGTTCGGAATCTTCCCAAGGATTTAAGAAGAGACATTAAGCGACATCTTTGTTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTCTGGATGCAATGTGTGACCGTCTGAAGCCGGTGCTGTTCACCGAAGAAAGCTACATTGTGAGGGAAGGAGACCCGGTTGATGAGATGCTGTTCATAATGCGTGGTAAGTTATTGACCATAACAACGAACGGTGGAAGAACTGGTTTCTTCAACTCTGAGTATCTGAAAGCTGGTGACTTTTGTGGAGAGGAGCTTCTGACATGGGCCTTGGATCCTCATTCCTCATCCAACCTTCCCACTTCAACAAGAACTGTTCAGACTCTTTCAGAAGTGGAAGCCTTTGCTCTCAAAGCTCATGACTTGAAGTTTGTGGCATCACAGTTCCGGCGCCTGCACAGCAAGCAGCTACGCCACACTTTCCGGTTCTACTCCCAACAATGGCGCAGCTGGGCGGCGTGTTTCATCCAAGCTGCGTGGCGGCGCTATAGTAAGAGGAAGCTTGAAGAGTCCCTGGTTGAAGAAGAGGAGAATAGGCTGCAGAATGTGTTGGGTAAATCTGGTGGAAGCTCACCCAGCCTTGGTGCTACAATATATGCTTCAAGGTTTGCTGCTAATGCTCTTACATTGCTTAGGCGTAATGGTGCAAAGAAGGGTAGGGTGCCTGAGAGATTACCCCCCATGCTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGCGGATGAGGAATAG 2160 0.419 MSTAQQEKFVRFRDSNLEKSSEGNYSDTKISQSGIFRTTLSSVSEKFQNGLESGSDRMKRFRTSFKSFPFSSVLCRSFSSRKKILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDIKMEITATVLRSFSDAFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLSSYFFVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRIIPLYREVTRASGILTETAWAGAAFNLFLYMLASHVAGAFWYLFSIERETSCWQEACRNNTAVCSKADMYCNDYLGGLSKISTFLNTSCPIQNADKNLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTYVWEICFAVFISVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRVRIRRYEQYKWQETRGVDEDNLVRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLFTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPTSTRTVQTLSEVEAFALKAHDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKRKLEESLVEEEENRLQNVLGKSGGSSPSLGATIYASRFAANALTLLRRNGAKKGRVPERLPPMLLQKPAEPDFTADEE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00942 719 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
Viun8g00942 719 SUPERFAMILY cAMP-binding domain-like 418 611 IPR018490 -
Viun8g00942 719 ProSiteProfiles IQ motif profile. 625 654 IPR000048 GO:0005515
Viun8g00942 719 FunFam Cyclic nucleotide-gated ion channel 1 487 605 - -
Viun8g00942 719 Pfam Ion transport protein 94 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun8g00942 719 Pfam Cyclic nucleotide-binding domain 510 599 IPR000595 -
Viun8g00942 719 MobiDBLite consensus disorder prediction 692 719 - -
Viun8g00942 719 SUPERFAMILY Voltage-gated potassium channels 86 411 - -
Viun8g00942 719 Gene3D - 93 413 - -
Viun8g00942 719 Gene3D Jelly Rolls 487 607 IPR014710 -
Viun8g00942 719 SMART cnmp_10 489 620 IPR000595 -
Viun8g00942 719 CDD CAP_ED 489 620 IPR000595 -
Viun8g00942 719 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Viun8g00942 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 72 714 - -
Viun8g00942 719 Gene3D Helix hairpin bin 415 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00942 Viun-Chr8 9896857 9903909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00942 5 718 Ion Channels AT5G53130 77.266 0.0 1137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00942 K05391 - gmx:100801032 1305.43