Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00938 ATGGACAGTGAACGGAGCGTGCCTGCTCCATCTCATGGGCAAGTTGACGGCGCTCAGAGAGTCAAAGCATTACATGGGAGGACTACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACACTAGAGGAGGATGACATCTTGCGGAAGGCAGTTGAGAAATTTAAGGGAAAGAATTGGAAAAAAATTGCGGAATGTTTCAAGGATAGGACTGATGTGCAATGCCTGCATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGAATTGGTGAATAAAAATGGGGCTAAAAAGTGGTCATCTCTTGCCCGGCATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAAGCCTGGACTCAGGAAGAGGAGTTGGCTCTAATACATTATCATCAGATATTTGGGAACAAATGGGCCGAGTTGTCAAAGTACATTCCTGGAAGGACCGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTAGATTCTTATTTGACATCTGGAATGCTTAATCAGTTTGAGCCTGTACCTCATGTTGGAAATTCAAATCAATCAACAAGGTTGCAGTGTAGTGGAGATGATAACTGTTCCAAAGGGATTGAAAGAGAAGAGGTTTCGGAGTCCAGCCAAAGTTCAGCTAATGCTGTTTGCTTTCCATCTGCTAGAGGGATGAGCAGTACTGAATTACAAACTGGAGAGGCGACTTGTAGGCCAAAGGAAGAATGTAATCTTCGAAAGGATCACAGTCCAAGTCGAGCATCTTGTTCAGAGCCATATTATGTATCAATTGATGATGTTAGTATATGCATTCCTGAAATTTCTCACCAAGAGGCATGCACTTCTCAGTTCATTGAGCAACAGTCACATGAACTGGGAAATTCCACAAGTGGGAATTGTCATTTCGATTTACATTCCTTACCCAATGTTTCATCAATGGTCGTGGGGCAGGATTCCTCGCAGTTGCATAGAGATTGTGTAGCTTCTGGTGAAATCTGTGACATGGTGAATGTTCCTTTTCGGACATCAGAGGCATTGGGTGCTTCAACTTCCATGGGGCCTGCATCTTTGGGTCCTCTTAAACCAGAGCATGTGTTGATATCTGATGATGAATGTTGCAGAGTTCTTTTTTCAGATTCAGTGAATGATGGGTGTTTCCCCCCTGTAGATTATATTAAAGGTGAAGAAACAGTTAAATTTTCTGGATGTACTTCATTTCGTTGCCAATCTTGTAATATCCAGATATCTGAAACTGGTGGATCCTCAACTCCTCAGCTAACTTGTCCTCGGTGTTCTAATAATTGTCAAGGAACTTCGTCCTCCCTGTCTAATCCTCCAGTATTTTCTGCATGTGATGATAGGGAGGGGCGAACAGCCAATGACAATCATTTATATGGGGCAGACGGTCAGCAATTGGTCTCCACAGCACCTGCTAACTTCACTTATGACAATTACATATCCAGTTCTCCCTGTGTTGATGGTATGGGTACTGTAGTAATGGAAGAAGCACGTGAGGAAAATGCAAATGTGCATGCAGAAAAGGAGGACTCAGGATCTCTCTGTTATGAACCTCCTCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCCTTGGGTATCCGCCAGTTTATGATGTCTTCTATGAATTGTCTTACTCCTTTTAAGTTGTGGGACTCACCCTCTCATGGTGATAGTCCAGATGCATTGTTAAAAAGTGCAGCTAAAACTTTTACAGGTACACCATCCATTTTAAAGAAACGACACCGAGATTTGTTGTCACCACTCTCAGATAAAAGAGTTGAAAAGAAACTTGAGACGGACATGACTACCTTCACCAAAAACATTTGCAGTTTGGATGTCATGTTCGGTGACAATGAGACTCAGGAAACAGATATCCCTTCATTGCAAAAACAGAACAGCAGTGCATGTGTTGATGATAATAAAGAAAATTGCGGACAAGGTTATGAGCCAACTAAGTATGCAATTTTCGATGAAAAGAACTCCCATGAAGATACTGTACACAATTCTCAGCCTAATGTAAAGCAACAGCAACTAAATATTGATGCCTCAGCTACTGCCATTGAACAAGAGCCTTCTGGAGTTTTGGTTGAACATGATGTGAATGACTTGACGCTGTCTTCTCCTGATCAAGTTGGTTTAAAATCAATCAGAGGTCTTGGTACAAGTACTAAAACACCCAAAAGCATGAACAGATCCTTGGAAGAAGTTCCAAATCAGAACAGCCATTTGAAATTATCTTCTAAAAATCCATGCTCAAGGGTTAATTCTAATTCTCCTTGTGTTCGTGCAAAAGAGCATGAAAAACTTTCTGTTGCTGTTACTCGTGTACAAGCTCCAGCAGCTCCAGTGGACAATTCAGGGGAACAAACCAGAAAGGATGGTGGTTTTGAAACATGTAGCATATTTGGTGGAACACCTTTTAGGAAAGGCCTTGAATCACCTTCCGCATGGAAATCTCCTTGGTTCTTCAACGCTTTTCTATCTAGCCCCGGACTTGGTACCGAACTTACAGTTGAGGATTTTGGGTATTTAATGAGCCCAGGTGATAGAAGCTATGATGCAATTGGGTTGCTAAAACAGATCAGTGAACATACTGCTGCTACATATGCCAATGCTCAAGAGATTTTGGGAAATGAAACTCCTAAGACATTACAGAAAGATTCATCTGGAAACGACAAGGATAACTGCCATGGTTCTCCCAATCAGCCTGGGAATCATTCTCAATTGGCTTCAAATGCATTGATAGAGCGACGCACACTTGACTTTAGCGAATGTGGAACACCAAGCAAGGGTGATGACAACAAATCCTCAGCTATAAGTTCCAAAAGCCCTTCTTCGTATCTGTTGAAAGGTTGTAGATGA 3012 0.416 MDSERSVPAPSHGQVDGAQRVKALHGRTTGPTRRSTKGQWTLEEDDILRKAVEKFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIELVNKNGAKKWSSLARHLPGRIGKQCRERWVNHLDPTIKKEAWTQEEELALIHYHQIFGNKWAELSKYIPGRTDNAIKNHWNSSVKKKLDSYLTSGMLNQFEPVPHVGNSNQSTRLQCSGDDNCSKGIEREEVSESSQSSANAVCFPSARGMSSTELQTGEATCRPKEECNLRKDHSPSRASCSEPYYVSIDDVSICIPEISHQEACTSQFIEQQSHELGNSTSGNCHFDLHSLPNVSSMVVGQDSSQLHRDCVASGEICDMVNVPFRTSEALGASTSMGPASLGPLKPEHVLISDDECCRVLFSDSVNDGCFPPVDYIKGEETVKFSGCTSFRCQSCNIQISETGGSSTPQLTCPRCSNNCQGTSSSLSNPPVFSACDDREGRTANDNHLYGADGQQLVSTAPANFTYDNYISSSPCVDGMGTVVMEEAREENANVHAEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFKLWDSPSHGDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRVEKKLETDMTTFTKNICSLDVMFGDNETQETDIPSLQKQNSSACVDDNKENCGQGYEPTKYAIFDEKNSHEDTVHNSQPNVKQQQLNIDASATAIEQEPSGVLVEHDVNDLTLSSPDQVGLKSIRGLGTSTKTPKSMNRSLEEVPNQNSHLKLSSKNPCSRVNSNSPCVRAKEHEKLSVAVTRVQAPAAPVDNSGEQTRKDGGFETCSIFGGTPFRKGLESPSAWKSPWFFNAFLSSPGLGTELTVEDFGYLMSPGDRSYDAIGLLKQISEHTAATYANAQEILGNETPKTLQKDSSGNDKDNCHGSPNQPGNHSQLASNALIERRTLDFSECGTPSKGDDNKSSAISSKSPSSYLLKGCR 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00938 1003 CDD SANT 91 135 IPR001005 -
Viun8g00938 1003 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Viun8g00938 1003 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Viun8g00938 1003 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Viun8g00938 1003 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Viun8g00938 1003 MobiDBLite consensus disorder prediction 927 957 - -
Viun8g00938 1003 MobiDBLite consensus disorder prediction 1 39 - -
Viun8g00938 1003 FunFam Transcriptional activator Myb isoform A 89 141 - -
Viun8g00938 1003 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Viun8g00938 1003 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Viun8g00938 1003 MobiDBLite consensus disorder prediction 764 808 - -
Viun8g00938 1003 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Viun8g00938 1003 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Viun8g00938 1003 FunFam Transcription factor MYB3R-2 142 204 - -
Viun8g00938 1003 Gene3D - 36 88 - -
Viun8g00938 1003 CDD SANT 40 83 IPR001005 -
Viun8g00938 1003 Gene3D - 142 201 - -
Viun8g00938 1003 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Viun8g00938 1003 Gene3D - 89 140 - -
Viun8g00938 1003 FunFam Transcriptional activator Myb isoform A 36 88 - -
Viun8g00938 1003 MobiDBLite consensus disorder prediction 979 997 - -
Viun8g00938 1003 MobiDBLite consensus disorder prediction 972 1003 - -
Viun8g00938 1003 SMART sant 36 85 IPR001005 -
Viun8g00938 1003 SMART sant 88 137 IPR001005 -
Viun8g00938 1003 SMART sant 140 188 IPR001005 -
Viun8g00938 1003 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Viun8g00938 1003 CDD SANT 143 183 IPR001005 -
Viun8g00938 1003 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Viun8g00938 1003 PANTHER MYB PROTEIN-RELATED 37 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00938 Viun-Chr8 9863400 9871732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00938 1 693 MYB Transcription Factor Family AT5G11510 39.448 7.96e-151 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g00938 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00938 - K09420 gmx:100794559 1507.66