Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00937 ATGGTATGCGGGAGTTGTGTAAGGTCTTTTTTGGTTGTTCAAGCTGGAACCTTCGCCAACAGAGTGAGAATCAACGGATTTGTGAGGAGTTTGCGGGTAGTTAGTGGTTTTTCTTACTGGCCGATTCGTGAATACAAGACAATCACAGGGATGATGGTTGATACGGGTTCTGTGTCAAGGGCTGGACCCCTTGTTGATATGATGCCTGAGAAAGATGATGATGGTAGGTTTGCCAGTGGAGGGTGGAAAAGTGAAGATGGAAGGCTTAGCTGTGGGTATTCAAGTTTTCGGGGGAAGAGAGCAACAATGGAAGATTTTTATGATATCAAGACATTGAAGATTGGTGGCCAATCAGTATGCCTATTTGGAATATTTGATGGTCATGGTGGTTCTCGAGCCGCTGAGTATTTGAAGGAGCATCTCTTTGATAATCTCTTGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGACGCTAACTTTCTGGATGCCGAAAAGGACACTTTCAGGGATGATGGATCTACAGCTTCGACAGCAGTCTTGGTTGATAACCATCTTTATGTAGCTAATGTTGGAGATTCTAGGACCATAATATCAAAAGCTGGTAAAGCAATTGCTCTCTCTGAGGATCATAAGCCAAATAGAAGTGATGAGAGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTTCTAGCAATGTCTCGGGCCTTTGGAAACCGTATGTTGAAGCAGTTTGTGGTAGCAGAACCTGAGATCCAGGACCAGCAGATGGATGAACAAATTGAACTTCTTATTCTTGCAAGTGATGGACTCTGGGATGTGGTACAGAATGATGACGCTGTTTCTCTTGCCCGCACAGAAGAGGAGCCAGAGGCAGCTGCTCGGAAGTTAACAGAAGCAGCATTTTCCCGTGGGAGTGCTGATAACATTACATGCATTGTGGTGCGCTTCCATCATGACAAAAAAGAGATGCCTAAACCTGACAAAGCAGAATCAGCTAGTGCTCAGCGTGAGTAG 1074 0.4469 MVCGSCVRSFLVVQAGTFANRVRINGFVRSLRVVSGFSYWPIREYKTITGMMVDTGSVSRAGPLVDMMPEKDDDGRFASGGWKSEDGRLSCGYSSFRGKRATMEDFYDIKTLKIGGQSVCLFGIFDGHGGSRAAEYLKEHLFDNLLKHPKFLTDAKLAISETYQQTDANFLDAEKDTFRDDGSTASTAVLVDNHLYVANVGDSRTIISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQQMDEQIELLILASDGLWDVVQNDDAVSLARTEEEPEAAARKLTEAAFSRGSADNITCIVVRFHHDKKEMPKPDKAESASAQRE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00937 357 FunFam Probable protein phosphatase 2C 76 82 342 - -
Viun8g00937 357 Gene3D - 81 357 IPR036457 -
Viun8g00937 357 PANTHER PROTEIN PHOSPHATASE 79 336 IPR015655 GO:0004722|GO:0006470
Viun8g00937 357 SUPERFAMILY PP2C-like 86 338 IPR036457 -
Viun8g00937 357 Pfam Protein phosphatase 2C 92 329 IPR001932 -
Viun8g00937 357 ProSiteProfiles PPM-type phosphatase domain profile. 90 336 IPR001932 -
Viun8g00937 357 CDD PP2Cc 90 336 IPR001932 -
Viun8g00937 357 SMART PP2C_SIG_2 72 336 IPR001932 -
Viun8g00937 357 SMART PP2C_4 80 334 IPR001932 -
Viun8g00937 357 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00937 Viun-Chr8 9806030 9814706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00937 1 357 PP2C-type Phosphatase Gene Family AT5G53140 67.282 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00937 K17506 - gmx:100813138 646.736