Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00932 ATGGAAGGGAATGTGAAAAGCGAGCAAATCGTGGACGTAGGATCGGTTGTGGAAGCCGTTTCAGCTGATGACGGTGACGCTCCTCTCTACAGCCTCGAAAGTCTTTGCATGCGCTGTGGTGAAAACGGGATCACAAGATTTTTATTGACTTTAATTCCTCACTTCAGAAAGATTTTGTTATCAGCTTTCGAATGTCCACACTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCACGTGGTTGTCGTTACACTTTGGCAATCCCATCAGGCGAGCAGAAGATGCTAAATCGTCAAGTGGTTAAATCAGAATCTGCTACCATTAAGATACCTGAACTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAAGGGATACTTATGAGAGCAGCTGATGAACTTCAGGCCCTTCAAGAGGAACGCAAAAAAGTGGCTCCAGAGACAGCTGAAGCAATTGATCAGTTCTTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCTATCACCTTTATTCTTGATGATCCTGCTGGAAACAGCTTCATCGAAAACCCGTTTGCACCGTCATCTGATCCATCTTTGACGATCAAGTTTTATGAGAGAACTCCTGAGCAACAAGCATCATTGGGATACGTTGTTGATTCCACACAGATTGAAAGAACTCATGTTGATGCTTCCGAAGGGGGAGAAGCTGTGCCTACTGATCAAGTAAGGAGAGAACCACATGGATCAATAGGTGCGACAGCTGGCCATCGAGCCATTGCTCAGAGTAACAGTGCCGAAATGGCTGAAGCCTTATTTCGATATACTGCACCGGAAGAGGTGATGACTTTCCCATCTACTTGTGGTGCCTGTGCTTCTAAGTGTGAGACTCGAATGTTTGTCACCAATATTCCTTACTTTCAAGAAGTAATTGTTATGGCATCCACATGTGATGCCTGTGGCTACCGCAACTCTGAGTTGAAACCTGGTGGACGAATTCCTGAAAAGGGGAAAAAAATTACTCTTTCTGTGAAGAATGTCAATGACCTTAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCGGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATAGTTACAACTGTTGAAGGTTTAATCACAAGAATTGGTGAAAGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTTGATGAAAATAGTAGAAGCAAGTGGATAGACTTCAAAACAAGACTAAACAAGCTTCTTAGTTTGGAAGAAGCTTGGACTCTAATTCTTGATGATGCATTAGCCAATTCTTTTATAGCACCTGCAACTGATGATATGAAAGAGGACAAACAATTAGCATTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATGGACACCTCTTCTGCCGAAGTTGGTTCTAAAACTGAGTGA 1482 0.4359 MEGNVKSEQIVDVGSVVEAVSADDGDAPLYSLESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCRYTLAIPSGEQKMLNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERKKVAPETAEAIDQFLVKLRACATGESAITFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYVVDSTQIERTHVDASEGGEAVPTDQVRREPHGSIGATAGHRAIAQSNSAEMAEALFRYTAPEEVMTFPSTCGACASKCETRMFVTNIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKKITLSVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITRIGESLERVHGFTFGDSLDENSRSKWIDFKTRLNKLLSLEEAWTLILDDALANSFIAPATDDMKEDKQLAFEEYERSWEQNEELGLNDMDTSSAEVGSKTE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00932 493 PANTHER ZINC FINGER PROTEIN ZPR1 15 489 IPR040141 -
Viun8g00932 493 Pfam ZPR1 zinc-finger domain 34 193 IPR004457 GO:0008270
Viun8g00932 493 Pfam ZPR1 zinc-finger domain 290 448 IPR004457 GO:0008270
Viun8g00932 493 SMART zpr1 34 194 IPR004457 GO:0008270
Viun8g00932 493 SMART zpr1 290 450 IPR004457 GO:0008270
Viun8g00932 493 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
Viun8g00932 493 Gene3D ZPR1, A/B domain 336 478 IPR042451 -
Viun8g00932 493 MobiDBLite consensus disorder prediction 476 493 - -
Viun8g00932 493 MobiDBLite consensus disorder prediction 472 493 - -
Viun8g00932 493 FunFam zinc finger protein ZPR1 80 221 - -
Viun8g00932 493 FunFam Zinc finger protein ZPR1 24 79 - -
Viun8g00932 493 FunFam Zinc finger protein ZPR1 336 478 - -
Viun8g00932 493 NCBIfam ZPR1 zinc finger domain 291 482 IPR004457 GO:0008270
Viun8g00932 493 NCBIfam ZPR1 zinc finger domain 36 219 IPR004457 GO:0008270
Viun8g00932 493 Gene3D ZPR1, zinc finger domain 280 335 IPR042452 -
Viun8g00932 493 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
Viun8g00932 493 FunFam Zinc finger protein ZPR1 281 335 - -
Viun8g00932 493 Coils Coil 130 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00932 Viun-Chr8 9707957 9718280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00932 6 489 C2H2 Transcription Factor Family AT5G22480 76.289 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00932 K06874 - gmx:100798741 874.004