Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00928 ATGCAAAAAGACAAGGAAATTGTTGGCAAAGAGGGTAAAGACATTGAAATGGAAGAAGACAAGAAGAAGGAAGAAACCCTACCACCTGGTTTTCGGTTTCACCCCACCGATGAAGAACTCATTTGTTACTACCTCACAAACAAGATTTCAGATTCTGATTTCACTGCAAAAGCAGTAGCTGTTGTAGATCTCAACAAATGTGAGCCATGGGATCTTCCTGGAAAGGCAAAAATGGGAGCAAAAGAATGGTACTTCTTCAACCTAAGGGATCGTAAATATCCGACAGGTGTGAGAACGAACAGAGCAACGAACACAGGGTACTGGAAAACCACCGGGAAAGACAAAGAGATCTTGAACAGTGTTACATCGGAGTTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGTAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGCAATCATTCAAAATCCACCTTCAAAATCACTAAGCAAGATGAATGGGTGGTTTGCCGGGTGTTCCGGAAGAGTGGTGGAGCAAAAAAGTTTCCCTCTAATCCCAACCACACCAGAACACTGAACCCTTATAGTCTTGAACTTAGCCCTAGCATGGTGCCACCACCACCAATGATGCACCTGGGTGATCCTTCTGCTCATTTCAATTTCCTTTCTGGATCAAGAAACTACATCATCAACCCTTCGGAAAGGCTCTTCAGAGATGCTGCATCCACAAGTCTCAATGTCATCAACCTCCCTATAATGCAACCCCATTTCAACCATCCACCACCACCGCCACCACCGGTTGCAGCAGCAGCAGCAGCAGGGTTCACCATTTCTGGCCTGAATTTGAACCTGGGAGGAGGAGCAGTTTCCACCACTGCCACCACACAAACACACCTACTTTCTGCTCACACGGTGACCCAAATGAATCATGATTTCAGTTCCAACATGGTCACTCCTGCTGCTCACGGTGTAGAGTATGGTGCAGACATCACCAATGCAAATTCTCATGCCAATAGGTTCATGTCCATCGATAACTGCATGGATCTAGACACTTACTGGCCTTCCTACTAA 1074 0.4572 MQKDKEIVGKEGKDIEMEEDKKKEETLPPGFRFHPTDEELICYYLTNKISDSDFTAKAVAVVDLNKCEPWDLPGKAKMGAKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRNHSKSTFKITKQDEWVVCRVFRKSGGAKKFPSNPNHTRTLNPYSLELSPSMVPPPPMMHLGDPSAHFNFLSGSRNYIINPSERLFRDAASTSLNVINLPIMQPHFNHPPPPPPPVAAAAAAGFTISGLNLNLGGGAVSTTATTQTHLLSAHTVTQMNHDFSSNMVTPAAHGVEYGADITNANSHANRFMSIDNCMDLDTYWPSY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00928 357 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
Viun8g00928 357 FunFam NAC domain-containing protein 100-like 36 180 - -
Viun8g00928 357 Pfam No apical meristem (NAM) protein 28 153 IPR003441 GO:0003677|GO:0006355
Viun8g00928 357 MobiDBLite consensus disorder prediction 1 29 - -
Viun8g00928 357 Gene3D NAC domain 36 179 IPR036093 GO:0003677|GO:0006355
Viun8g00928 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 291 - -
Viun8g00928 357 SUPERFAMILY NAC domain 24 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00928 Viun-Chr8 9627264 9635079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00928 18 357 NAC Transcription Factor Family AT2G24430 48.238 2.48e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun8g00928 NAM 1.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00928 - - pvu:PHAVU_001G059900g 523.857