Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00907 ATGAGAAACAGTTTGGTGACGATGCGGAGAGAGAGGGCATTGTTCCTGCTACTGCTACTGCTACTTCTACTCCATCATATTTGTGCTTCCAAGGCCCACAAAAAACACCGTTGTTTTCCTTCTTCCTGTGGAAAAATCACCAACATCAGTTATCCATTTCGATTAAACGGCGACCCAGAGAAGTGTGGTGAGGAAAGGTATGAGCTTGGTTGTGAAAATAATGTTACGCTGTTGTATATGAACTCAGAAGAATTCCATGTGGAGGCAATAAACTACAAGAACTACACGGTGAGAGTGGTTGATCCTGCACTTCAACTCCACAATTGCTCATCCCATCCTCTGCGTTCCCTCTCTCGCTCCAATTTCTCTGATAGTTACACTTACACTTACTCTTTGGATCCATACCAAGCCGGTCTAAGTTCGTATGAAAATCGGGAATCTCTGATTTTCGAGCATATAGTGTTTCTGAGTTGTAACCATTCGGTGAGAGAGAATGGGAAGTATCTGAAAACAGAAGAGTGCGTGAAGTGGGACTCAAAGGGATATGCATATGCTGTTGTTGGTGACTTAAAAGCAGAGGACTTGGAAGTTGGGTGTGACATAAAGCTTGTTGTTCCAACATCTTTGAGGACTTTCAATAACCATTCCTACACTTCCATGCACAACAGCTTGGCCTATGGATTTGAGATTTCTTGGATAAAACTCGCCTGCCAGAATTGTCCACTTAGATTCTGCTATTTCGACTCTGCGAGCCAGAAACTTGGTTGCCGACCTTTTTATACTTCTCTCGCATGTTCTCTCGCATGGGCTTACAAAATTTTGTTCGGATTGCCATTCTTAATTGTGATTTTTATATGTAAATGGAGGAAAAGACATGCATCAACATATGCAAATATTGAAAACTACCTTGAACAAAATCATTTGGCACCTATTAGATATTCATACAAGGAAATTAAGAAGATGACCGGAGGTTTTAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTTTGTCTTTAAGGCAAAGTTGCGGAGCGGACCTTTTGTGGCAATCAAAATGTTAGGTAAATCTAAAGGAAATGGACAAGATTTTATAAACGAAGTTGCAACCATTGGAAGGATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGCTAGTGGCTCAAAGCGTGCTCTTGTTTATGAATTCATGTCCAATGGATCTCTTGATAAACTTATATTTTCAAGGGCTGGAAGTATAGATTTAAGCTATAAGAAAATACATAATATATCAATTGGAGTGGCTCGTGGGATTGCTTATCTCCATCATGGGTGTGAGATGCAGATTTTGCATTTCGATATCAAACCCCATAACATCTTACTCGATGAAAACTTTATCCCAAAGGTTTCTGACTTTGGATTAGCAAAGCTATATCCAATAGATAGTAGCATTGTCACAATGACGACAACAAGAGGAACTATTGGATATATGGCTCCAGAATTGTTTTACAATAATGTTGGAGGAATATCTCATAAAGCTGATGTCTATAGCTTCGGAATGTTATTGATGGAGATGGCAAGCAAAAGGAATAATCTAAATCCCCATGTAGAATACTCAAGTCAACTTTACTTTCCCCTTTGGATCTATAATCATATTAGAGAAGAGGAAGATATAGATATAAAAGATTTGACTAAAGAGGAAAAGATAATAGCAAAAAAACTTATCATAGTTGCTCTTTGGTGCATACAATTGAAACCAAACGATCGTCCTTCAATGAACAAAGTAGTGGAAATGCTTGAGGGAGGCGTTGAGGACTTGGAAATTCCTCCAAAACCTACTTTATTTCCTGATGAAACGAGTTTAGAGGATCAAACAACTAGCTCTATCTAA 1872 0.3868 MRNSLVTMRRERALFLLLLLLLLLHHICASKAHKKHRCFPSSCGKITNISYPFRLNGDPEKCGEERYELGCENNVTLLYMNSEEFHVEAINYKNYTVRVVDPALQLHNCSSHPLRSLSRSNFSDSYTYTYSLDPYQAGLSSYENRESLIFEHIVFLSCNHSVRENGKYLKTEECVKWDSKGYAYAVVGDLKAEDLEVGCDIKLVVPTSLRTFNNHSYTSMHNSLAYGFEISWIKLACQNCPLRFCYFDSASQKLGCRPFYTSLACSLAWAYKILFGLPFLIVIFICKWRKRHASTYANIENYLEQNHLAPIRYSYKEIKKMTGGFKEKLGEGGFGFVFKAKLRSGPFVAIKMLGKSKGNGQDFINEVATIGRIHHQNVVQLIGFCASGSKRALVYEFMSNGSLDKLIFSRAGSIDLSYKKIHNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDSSIVTMTTTRGTIGYMAPELFYNNVGGISHKADVYSFGMLLMEMASKRNNLNPHVEYSSQLYFPLWIYNHIREEEDIDIKDLTKEEKIIAKKLIIVALWCIQLKPNDRPSMNKVVEMLEGGVEDLEIPPKPTLFPDETSLEDQTTSSI 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00907 623 SMART serkin_6 323 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00907 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 294 614 IPR045874 GO:0004672
Viun8g00907 623 FunFam PR5-like receptor kinase 398 605 - -
Viun8g00907 623 Gene3D Phosphorylase Kinase; domain 1 297 397 - -
Viun8g00907 623 FunFam serine/threonine-protein kinase PBS1-like 291 397 - -
Viun8g00907 623 MobiDBLite consensus disorder prediction 604 623 - -
Viun8g00907 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Viun8g00907 623 Pfam Protein kinase domain 326 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00907 623 ProSiteProfiles Protein kinase domain profile. 323 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00907 623 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Viun8g00907 623 Pfam Wall-associated receptor kinase galacturonan-binding 40 101 IPR025287 GO:0030247
Viun8g00907 623 Gene3D Transferase(Phosphotransferase) domain 1 398 601 - -
Viun8g00907 623 SUPERFAMILY Protein kinase-like (PK-like) 307 593 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00907 Viun-Chr8 9071449 9077147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00907 15 608 Receptor kinase-like Gene Family AT5G38260 35.065 4.57e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g00907 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00907 - - vun:114195573 931.784