Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00902 ATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGAACCATGTATTTAGAGATACTGCTAATACTAGAGAACGAACAGGTCAAGTTTGCAGCAAATTGGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGCCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTGTATTCCAGTCTTCTTCAAGTAGCAAGGATGAAATTGGAAGTTCCTCTAGATCTACTAGTAACCCAGCAAAACGAACTACGGAACCTCAGAAAGTATTTCCCTCTCAGTTTGAGGCAGATTCACCTGAGAGTAGTAGTGTACAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAGGAAATTCAGAGAGGGGCTAAATCCAGGGGGCCAAGTTCAGAGTCTAGTAATGCAAGACTGATGGAAGTAGGAAGCTCCAGTACAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGACCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGATACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTTATGTTATCCCATCTAGTTGTTCATCATCAGATTCAAGTCATAATAGAAGGAAGGATACAACAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATGTCATTGGATCTTCATCGGAAGGACGGAGTTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACATTTTCTCACCGGAATACCAGTTTGGCACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGTCAGGGCAAGGATTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGTGAGTTCCCTCATTTTGGTGATGTTAATCCTCACGGCATTTCATGTCAGATTTCTATGGAGACTCCTTTAACTTGCTCAAGCTCTTGTGATTCACCAGGCAATAGCAGTGAGGATTTACCTCTGTCTCCTCCTGCAGAAGATGACATAACTGATTCTCTAAATGGGGACAGCTTTTGGCATTACAATATGTCCAGTATTGAAGGGGTATTGTTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGCGAGCAAATTACCGACATCTACGAGAATGGATTAAACTTTTATGATCACCATAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCTCTGGAAGAGAGGATGGGAACTGTTAGCACAGCTCTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCGCCTACATATGACACAGATGAGAATTGCAATCAGGACAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAAGTTGGGGACCTGCCATGCAATCATAGGTTTCATGTGGATTGTATACAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTAATAATTCATCTTCATCTCATTGA 1572 0.4262 MDEYSGRRGVDGVAVPRKGMNHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQARSSEKGKSVRPVFQSSSSSKDEIGSSSRSTSNPAKRTTEPQKVFPSQFEADSPESSSVQDEPESSELIPPSEEIQRGAKSRGPSSESSNARLMEVGSSSTVSNTRSQRNLNQRPGLRGQEIKSTGPVIHAVSSRYGLRNIRCNTISYVIPSSCSSSDSSHNRRKDTTKKRDGEGESSSTVRGKNVIGSSSEGRSSGSRNGISISDSRRTRNTFSHRNTSLAPVRTQRSLSGHVRARISSQGNENPLATSEFPHFGDVNPHGISCQISMETPLTCSSSCDSPGNSSEDLPLSPPAEDDITDSLNGDSFWHYNMSSIEGVLLALERIEQGGELTREQITDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSSH 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00902 523 ProSiteProfiles Zinc finger RING-type profile. 469 510 IPR001841 -
Viun8g00902 523 MobiDBLite consensus disorder prediction 133 173 - -
Viun8g00902 523 MobiDBLite consensus disorder prediction 328 342 - -
Viun8g00902 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 71 513 IPR045191 GO:0061630
Viun8g00902 523 MobiDBLite consensus disorder prediction 63 119 - -
Viun8g00902 523 MobiDBLite consensus disorder prediction 204 308 - -
Viun8g00902 523 MobiDBLite consensus disorder prediction 213 232 - -
Viun8g00902 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 514 IPR013083 -
Viun8g00902 523 MobiDBLite consensus disorder prediction 328 349 - -
Viun8g00902 523 SMART ring_2 469 509 IPR001841 -
Viun8g00902 523 SUPERFAMILY RING/U-box 462 513 - -
Viun8g00902 523 MobiDBLite consensus disorder prediction 1 176 - -
Viun8g00902 523 MobiDBLite consensus disorder prediction 233 302 - -
Viun8g00902 523 FunFam E3 ubiquitin-protein ligase arkadia 431 515 - -
Viun8g00902 523 Pfam Ring finger domain 468 510 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00902 Viun-Chr8 8970152 8975385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00902 367 513 C3H Transcription Factor Family AT2G15530 47.403 4.72e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00902 - - vum:124824270 901.353