Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00901 ATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGAACCATGTATTTAGAGATACTGCTAATACTAGAGAACGAACAGGTCAAGTTTGCAGCAAATTGGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGCCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTGTATTCCAGTCTTCTTCAAGTAGCAAGGATGAAATTGGAAGTTCCTCTAGATCTACTAGTAACCCAGCAAAACGAACTACGGAACCTCAGAAAGTATTTCCCTCTCAGTTTGAGGCAGATTCACCTGAGAGTAGTAGTGTACAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAGGAAATTCAGAGAGGGGCTAAATCCAGGGGGCCAAGTTCAGAGTCTAGTAATGCAAGACTGATGGAAGTAGGAAGCTCCAGTACAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGACCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGATACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTTATGTTATCCCATCTAGTTGTTCATCATCAGATTCAAGTCATAATAGAAGGAAGGATACAACAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATGTCATTGGATCTTCATCGGAAGGACGGAGTTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACATTTTCTCACCGGAATACCAGTTTGGCACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGTCAGGGCAAGGATTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGCAATAGCAGTGAGGATTTACCTCTGTCTCCTCCTGCAGAAGATGACATAACTGATTCTCTAAATGGGGACAGCTTTTGGCATTACAATATGTCCAGTATTGAAGGGGTATTGTTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGCGAGCAAATTACCGACATCTACGAGAATGGATTAAACTTTTATGATCACCATAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCTCTGGAAGAGAGGATGGGAACTGTTAGCACAGCTCTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCGCCTACATATGACACAGATGAGAATTGCAATCAGGACAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAAGTTGGGGACCTGCCATGCAATCATAGGTTTCATGTGGATTGTATACAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTAATAATTCATCTTCATCTCATTGA 1473 0.4263 MDEYSGRRGVDGVAVPRKGMNHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQARSSEKGKSVRPVFQSSSSSKDEIGSSSRSTSNPAKRTTEPQKVFPSQFEADSPESSSVQDEPESSELIPPSEEIQRGAKSRGPSSESSNARLMEVGSSSTVSNTRSQRNLNQRPGLRGQEIKSTGPVIHAVSSRYGLRNIRCNTISYVIPSSCSSSDSSHNRRKDTTKKRDGEGESSSTVRGKNVIGSSSEGRSSGSRNGISISDSRRTRNTFSHRNTSLAPVRTQRSLSGHVRARISSQGNENPLATSNSSEDLPLSPPAEDDITDSLNGDSFWHYNMSSIEGVLLALERIEQGGELTREQITDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSSH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00901 490 SUPERFAMILY RING/U-box 429 480 - -
Viun8g00901 490 SMART ring_2 436 476 IPR001841 -
Viun8g00901 490 MobiDBLite consensus disorder prediction 133 173 - -
Viun8g00901 490 MobiDBLite consensus disorder prediction 63 119 - -
Viun8g00901 490 MobiDBLite consensus disorder prediction 233 311 - -
Viun8g00901 490 MobiDBLite consensus disorder prediction 213 232 - -
Viun8g00901 490 MobiDBLite consensus disorder prediction 204 321 - -
Viun8g00901 490 FunFam E3 ubiquitin-protein ligase arkadia 398 482 - -
Viun8g00901 490 ProSiteProfiles Zinc finger RING-type profile. 436 477 IPR001841 -
Viun8g00901 490 Pfam Ring finger domain 435 477 IPR001841 -
Viun8g00901 490 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 60 480 IPR045191 GO:0061630
Viun8g00901 490 MobiDBLite consensus disorder prediction 1 176 - -
Viun8g00901 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 481 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00901 Viun-Chr8 8970152 8975385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00901 334 480 C3H Transcription Factor Family AT2G15530 47.403 2.32e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00901 - - vum:124824270 822.002