Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00895 ATGCCAGGGTTAACGTGCAACGCTTGCAACACGGAGTTCAAGGATGACACAGAGCAAAAGCTCCATTACAAGTCCGAGTGGCACCGCTACAATCTCAAACGCAAGGTGGCTGGTGTTCCTGGTGTGACGGAAGCACTGTTTCTGGCTAGGCAATCTGTGATTGCTCAAGAGAAAAACAAATTGAGTGAGACCCCCATGATGTATACCTGCGGTCTTTGTGGAAAGGATTATAAAAGTTCAAAAGCTCATGCTGAGCACCTTAAATCTCGTGGTCATATGATGCGGGCCTCTGAAGGAACTAGTGATGCAGATGAGAAGGCAATAATTAAGCCACTTGCACAACGTGTTGTGAATAGACCTCCTCCTAGAAGAGAGGTAGATAACTCTGAAAATGAAGAAAGTGAGGATGAATGGGAGGAGGTTGATCCCGAAGATGATTTGGCTGATGGGGCTGCAAAGTCCTTGACAGGTTTGAATGTGAATGAGCAAGGTGAAAATGTTGATATGGATGAAGATGAAGATGAAGATGACAACGATGAGGATGACTTTGAGTTAGACCCTTCATGTTGCTTTATGTGTGATCAAAAGCACAAAACAATTGAAGACTGCATGGTTCACATGCACAAGCAGCACGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACATATCTTGGCCTTAAGGTCAAAAGGGACTACGAGTGTCTGTATTGCAATGATCGATGTTATCCTTTCAGCAGCTTAGAAGCAGTCAGGAAACATATGGTAGCAAAAAGCCATTGTAAAGTGCATTTTGGTGATGGTGATGATGAGGAGGAGGTAGAGTTAGAGGAGTTCTATGACTACAGCAGTAGTTATGTGGATGATCAGGGCAAGCAGATCATTGTATCTGGTGAAACAGGTAACAATGTAGAACTTGTTGGTGGGTCTGAGCTCGTAATCACCCGAAAATCTGGTGATAGAACATCAACCAGAACACTTGGTTCTCGAGAATTTTTGCGTTACTATCGTCAGAAACCCCGTCCATCACCGGCAAATAGTATGGCCATTACTGCTGCGTTGGCTTCAAGGTACAGGAGCATGGGCTTGACCACTGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTGCTGAAGGAAATGAGTAGGTCAGGTGTGGAGAATATGCGTACCAAGATAGCAATGAAGAGTAATGTTATCCGAAACCTGCCAAAGAATGTCCCATATTAG 1248 0.4423 MPGLTCNACNTEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVIAQEKNKLSETPMMYTCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSDADEKAIIKPLAQRVVNRPPPRREVDNSENEESEDEWEEVDPEDDLADGAAKSLTGLNVNEQGENVDMDEDEDEDDNDEDDFELDPSCCFMCDQKHKTIEDCMVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVKRDYECLYCNDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDDEEEVELEEFYDYSSSYVDDQGKQIIVSGETGNNVELVGGSELVITRKSGDRTSTRTLGSREFLRYYRQKPRPSPANSMAITAALASRYRSMGLTTVQSREQIVRMKVLKEMSRSGVENMRTKIAMKSNVIRNLPKNVPY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00895 415 MobiDBLite consensus disorder prediction 110 182 - -
Viun8g00895 415 MobiDBLite consensus disorder prediction 165 182 - -
Viun8g00895 415 Pfam C2H2 type zinc-finger (2 copies) 190 291 IPR041661 -
Viun8g00895 415 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Viun8g00895 415 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Viun8g00895 415 SMART c2h2final6 188 211 IPR013087 -
Viun8g00895 415 SMART c2h2final6 239 266 IPR013087 -
Viun8g00895 415 SMART c2h2final6 68 92 IPR013087 -
Viun8g00895 415 SMART c2h2final6 4 28 IPR013087 -
Viun8g00895 415 MobiDBLite consensus disorder prediction 130 146 - -
Viun8g00895 415 PANTHER ZINC FINGER PROTEIN 622 2 414 IPR040025 -
Viun8g00895 415 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Viun8g00895 415 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Viun8g00895 415 SUPERFAMILY beta-beta-alpha zinc fingers 173 249 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00895 1 415 C2H2 Transcription Factor Family AT4G31420 67.064 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun8g00895 zf-C2H2_2 2.8e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00895 K14816 - gmx:100796317 699.123